Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQM47_RS01430 Genome accession   NZ_LS483360
Coordinates   264115..265041 (+) Length   308 a.a.
NCBI ID   WP_023610798.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10876     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 259115..270041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM47_RS01420 (NCTC10876_00282) amiA 260578..262548 (+) 1971 WP_063633020.1 peptide ABC transporter substrate-binding protein Regulator
  DQM47_RS01425 (NCTC10876_00283) amiC 262613..264115 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  DQM47_RS01430 (NCTC10876_00284) amiD 264115..265041 (+) 927 WP_023610798.1 oligopeptide ABC transporter permease OppC Regulator
  DQM47_RS01435 (NCTC10876_00285) amiE 265050..266120 (+) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  DQM47_RS01440 (NCTC10876_00286) amiF 266113..267036 (+) 924 WP_023610800.1 ABC transporter ATP-binding protein Regulator
  DQM47_RS10205 - 267074..267157 (-) 84 Protein_231 IS3 family transposase -
  DQM47_RS01450 - 267184..267423 (-) 240 WP_023077809.1 hypothetical protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34848.78 Da        Isoelectric Point: 8.5670

>NTDB_id=1138453 DQM47_RS01430 WP_023610798.1 264115..265041(+) (amiD) [Streptococcus pyogenes strain NCTC10876]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWVGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1138453 DQM47_RS01430 WP_023610798.1 264115..265041(+) (amiD) [Streptococcus pyogenes strain NCTC10876]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCGAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGGTTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

72.727

100

0.727
  amiD Streptococcus thermophilus LMD-9

72.727

100

0.727

Multiple sequence alignment