Detailed information NTG1138162

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: DQL13_RS05480
• Genome accession: NZ_LS483354
• Coordinates: 1147692..1148921 (-)
• Length: 409 a.a.
• NCBI ID: WP_012515695.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain NCTC11606
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1142692..1153921

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL13_RS05470 (NCTC11606_01087)	hupY	1143710..1146721 (-)	3012	WP_012515693.1	leucine-rich repeat adhesin HupY/LrrG	-
DQL13_RS05475 (NCTC11606_01088)	yihA	1147083..1147682 (-)	600	WP_041785521.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
DQL13_RS05480 (NCTC11606_01089)	clpX	1147692..1148921 (-)	1230	WP_012515695.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
DQL13_RS05485 (NCTC11606_01090)	-	1148957..1149127 (-)	171	WP_012515696.1	hypothetical protein	-
DQL13_RS05490 (NCTC11606_01091)	-	1149147..1149644 (-)	498	WP_041785524.1	dihydrofolate reductase	-
DQL13_RS05495 (NCTC11606_01092)	-	1149725..1150564 (-)	840	WP_012515698.1	thymidylate synthase	-
DQL13_RS05500 (NCTC11606_01093)	-	1150749..1151924 (+)	1176	WP_012515699.1	hydroxymethylglutaryl-CoA synthase	-
DQL13_RS05505 (NCTC11606_01094)	-	1151911..1153194 (+)	1284	WP_172453607.1	hydroxymethylglutaryl-CoA reductase, degradative	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45217.72 Da
• Isoelectric Point: 4.5698

>NTDB_id=1138162 DQL13_RS05480 WP_012515695.1 1147692..1148921(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLSDLTEVPKPKELLDILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFEKSALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVTKVRITKEAVEG
QSKPILEIA

Nucleotide

• Length: 1230 bp

>NTDB_id=1138162 DQL13_RS05480 WP_012515695.1 1147692..1148921(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGCAACAATGTCTTTATTTGTAATGAATGCGTTGCCTTGTCACAAGAAATCATCAAAGAAGAATTGGCAGAGGAGG
TTCTCTCTGATCTGACTGAGGTACCAAAGCCAAAAGAGCTCCTTGATATTTTAAATCAATACGTCATTGGGCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTACAACCACTACAAGAGGATTTCATTTACTGAGAGTCGTGACGATGATGATGT
GGATTTGCAAAAGTCAAACATTCTGATGATTGGACCAACAGGCTCAGGTAAGACCTTTTTAGCCCAGACTCTGGCTAAGA
GCCTTAATGTTCCATTTGCTATTGCTGATGCAACCTCTTTGACTGAAGCAGGCTATGTCGGAGAGGATGTGGAAAATATC
CTTCTGAAATTAATTCAAGCCGCTGATTACAATGTTGAACGTGCAGAGCGCGGCATTATTTATGTTGACGAAATTGATAA
AATCGCTAAAAAAGGTGAGAATGTCTCCATTACTCGTGATGTATCAGGAGAGGGTGTCCAACAAGCCTTGCTAAAAATTA
TTGAGGGAACGGTTGCTAGTGTTCCACCGCAAGGTGGTCGTAAGCACCCAAACCAAGAGATGATACAGATTGATACCAAA
AATATCTTGTTTATCGTCGGAGGCGCCTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGAGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCTTCCTATATGCAGGAGATCATTGCTGAGGATATTCAAAAATTTG
GTCTGATTCCCGAATTTATTGGACGCTTGCCTGTTGTAGCAGCGCTTGAGCAGCTTAATACTGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCCCTTGTGAAGCAATATCAAGCCTTATTGTCATATGATGGCGTAGAGCTTGAGTTTGAAAA
GAGTGCTCTGGAGGCTATTGCAGGCAGGGCTATTGAGCGCAAGACTGGTGCACGTGGTCTGAGGTCTATTATTGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAACCAAGGTACGCATTACTAAGGAAGCTGTCGAAGGT
CAATCAAAGCCTATTTTAGAGATAGCCTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-390)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.753	100	0.888
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.352	98.044	0.582