Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DQL39_RS09105 Genome accession   NZ_LS483353
Coordinates   47949..48047 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC4001     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 42949..53047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL39_RS00250 (NCTC4001_00050) purK 43011..44084 (+) 1074 WP_038433065.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  DQL39_RS00255 (NCTC4001_00051) - 44086..45504 (+) 1419 WP_038433067.1 hypothetical protein -
  DQL39_RS00260 (NCTC4001_00052) purB 45524..46816 (+) 1293 WP_011888525.1 adenylosuccinate lyase -
  DQL39_RS00265 (NCTC4001_00053) comR 46947..47858 (+) 912 WP_011888526.1 helix-turn-helix domain-containing protein Regulator
  DQL39_RS09105 (NCTC4001_00054) comS 47949..48047 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  DQL39_RS00270 (NCTC4001_00055) ruvB 48078..49076 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  DQL39_RS00275 (NCTC4001_00056) - 49214..49651 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  DQL39_RS00280 (NCTC4001_00057) - 49674..50075 (+) 402 WP_011017240.1 MORN repeat-containing protein -
  DQL39_RS00285 (NCTC4001_00058) - 50072..51847 (+) 1776 WP_002987732.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=1138130 DQL39_RS09105 WP_020833188.1 47949..48047(+) (comS) [Streptococcus pyogenes strain NCTC4001]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=1138130 DQL39_RS09105 WP_020833188.1 47949..48047(+) (comS) [Streptococcus pyogenes strain NCTC4001]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437

Multiple sequence alignment