Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   DQL39_RS08990 Genome accession   NZ_LS483353
Coordinates   1765342..1766118 (+) Length   258 a.a.
NCBI ID   WP_002981939.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC4001     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1760342..1771118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL39_RS08970 (NCTC4001_01774) - 1761904..1762923 (-) 1020 WP_038433776.1 IS30-like element IS1239 family transposase -
  DQL39_RS08980 (NCTC4001_01776) rlmH 1763339..1763818 (-) 480 WP_011889262.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQL39_RS08985 (NCTC4001_01777) htrA 1764030..1765253 (+) 1224 WP_002981947.1 S1C family serine protease Regulator
  DQL39_RS08990 (NCTC4001_01778) spo0J 1765342..1766118 (+) 777 WP_002981939.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 29056.87 Da        Isoelectric Point: 10.3100

>NTDB_id=1138129 DQL39_RS08990 WP_002981939.1 1765342..1766118(+) (spo0J) [Streptococcus pyogenes strain NCTC4001]
MTKELLIDLPIEDIVTNPYQPRIQFNQRELQDLATSIKSNGLIQPIIVRKSDIFGYELVAGERRLKASKMAGLKKIPAII
KKISTLESMQQAIVENLQRSNLNAIEEAKAYQLLVEKKHMTHDEIAKYMGKSRPYISNTLRLLQLPAPIIKAIEEGKISA
GHARALLTLSDDKQQLYLTHKIQNEGLSVRQIEQLVTSTPSSKLSKKTKNIFATSLEKQLAKSLGLSVNMKLTANHSGYL
QISFSNDDELNRIINKLK

Nucleotide


Download         Length: 777 bp        

>NTDB_id=1138129 DQL39_RS08990 WP_002981939.1 1765342..1766118(+) (spo0J) [Streptococcus pyogenes strain NCTC4001]
ATGACAAAAGAATTATTGATAGACCTACCAATTGAAGATATTGTTACAAATCCCTATCAGCCAAGGATACAATTTAATCA
AAGAGAACTCCAAGACCTAGCAACTTCTATTAAATCAAACGGCCTCATTCAACCTATTATTGTTCGAAAATCTGACATTT
TTGGCTATGAGTTAGTTGCTGGAGAACGACGACTTAAAGCTTCAAAAATGGCTGGTCTAAAAAAAATTCCAGCTATCATC
AAGAAGATCTCTACACTCGAGAGCATGCAACAAGCTATAGTTGAAAATTTACAACGTTCTAACCTTAACGCTATCGAAGA
AGCTAAAGCCTATCAGTTATTGGTTGAAAAAAAACACATGACTCACGATGAGATTGCTAAATATATGGGAAAATCAAGAC
CTTATATTAGCAATACCTTACGTCTGTTACAACTCCCAGCACCTATCATTAAAGCAATTGAAGAAGGAAAAATTAGTGCG
GGACACGCGCGTGCTCTTTTAACTTTGAGTGATGATAAGCAACAACTGTACCTCACTCATAAAATACAAAATGAAGGCCT
AAGTGTTAGGCAAATTGAGCAACTGGTTACTTCTACTCCAAGTTCGAAGCTATCTAAAAAAACTAAAAATATTTTTGCCA
CTTCTTTAGAGAAACAATTGGCTAAATCATTGGGACTCTCTGTCAATATGAAGCTGACAGCAAACCATAGTGGGTACCTT
CAGATATCTTTTTCCAATGATGATGAATTAAACAGAATTATCAACAAGCTAAAGTAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(148-197)

ParB/Sulfiredoxin domain (ParB_N)

(9-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

59.144

99.612

0.589

Multiple sequence alignment