Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DQM42_RS01670 Genome accession   NZ_LS483351
Coordinates   293718..294788 (+) Length   356 a.a.
NCBI ID   WP_002986002.1    Uniprot ID   Q1JNF7
Organism   Streptococcus pyogenes strain NCTC8195     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 288718..299788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM42_RS01655 (NCTC8195_00336) amiA 289246..291216 (+) 1971 WP_002986009.1 peptide ABC transporter substrate-binding protein Regulator
  DQM42_RS01660 (NCTC8195_00337) amiC 291281..292783 (+) 1503 WP_002986006.1 ABC transporter permease Regulator
  DQM42_RS01665 (NCTC8195_00338) amiD 292783..293709 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  DQM42_RS01670 (NCTC8195_00339) amiE 293718..294788 (+) 1071 WP_002986002.1 ABC transporter ATP-binding protein Regulator
  DQM42_RS01675 (NCTC8195_00340) amiF 294781..295704 (+) 924 WP_111690642.1 ABC transporter ATP-binding protein Regulator
  DQM42_RS10380 - 295742..295831 (-) 90 WP_110002794.1 IS3 family transposase -
  DQM42_RS09955 - 295852..296097 (-) 246 WP_002985998.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39749.85 Da        Isoelectric Point: 5.7015

>NTDB_id=1137979 DQM42_RS01670 WP_002986002.1 293718..294788(+) (amiE) [Streptococcus pyogenes strain NCTC8195]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGRQITEVIIKHQKVSNAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1137979 DQM42_RS01670 WP_002986002.1 293718..294788(+) (amiE) [Streptococcus pyogenes strain NCTC8195]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATCGGTAGACAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTAATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1JNF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.389

100

0.772
  amiE Streptococcus thermophilus LMG 18311

75.278

100

0.761
  amiE Streptococcus thermophilus LMD-9

75.278

100

0.761
  oppD Streptococcus mutans UA159

56.677

94.663

0.537

Multiple sequence alignment