Detailed information NTG1137980

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQM42_RS01675
• Genome accession: NZ_LS483351
• Coordinates: 294781..295704 (+)
• Length: 307 a.a.
• NCBI ID: WP_111690642.1
• Uniprot ID: -
• Organism: Streptococcus pyogenes strain NCTC8195
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 289781..300704

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM42_RS01660 (NCTC8195_00337)	amiC	291281..292783 (+)	1503	WP_002986006.1	ABC transporter permease	Regulator
DQM42_RS01665 (NCTC8195_00338)	amiD	292783..293709 (+)	927	WP_002986004.1	oligopeptide ABC transporter permease OppC	Regulator
DQM42_RS01670 (NCTC8195_00339)	amiE	293718..294788 (+)	1071	WP_002986002.1	ABC transporter ATP-binding protein	Regulator
DQM42_RS01675 (NCTC8195_00340)	amiF	294781..295704 (+)	924	WP_111690642.1	ABC transporter ATP-binding protein	Regulator
DQM42_RS10380	-	295742..295831 (-)	90	WP_110002794.1	IS3 family transposase	-
DQM42_RS09955	-	295852..296097 (-)	246	WP_002985998.1	hypothetical protein	-

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34643.84 Da
• Isoelectric Point: 6.7095

>NTDB_id=1137980 DQM42_RS01675 WP_111690642.1 294781..295704(+) (amiF) [Streptococcus pyogenes strain NCTC8195]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISGGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERQKELVVYHPDQHDYTLDKPSMVEIKPNHFVWANQAEIEKYQKEL

Nucleotide

• Length: 924 bp

>NTDB_id=1137980 DQM42_RS01675 WP_111690642.1 294781..295704(+) (amiF) [Streptococcus pyogenes strain NCTC8195]
ATGTCTGAGAAATTAGTCGAAGTAAAAGACCTAGAAATTTCCTTCGGAGAAGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCTAATTTCTTTATTAAAAAAGGAGAAACCTTTTCTTTAGTTGGAGAATCTGGGAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAACGATACTAGTTCAGGTCAAATTTTATACGATGGGAAAGTAATTAATGGCAGAAAATCAAAATCA
GAAGCCAATGAGCTCATTCGTAAAATTCAAATGATTTTCCAAGATCCCGCTGCTAGTTTGAATGAACGGGCAACCGTTGA
CTACATCATTTCAGGAGGTCTTTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGCTATCAGAGCATTTGACGCGCTACCCTCATGAATTTTCAGGAGGTCAACGTCAGCGGATCGGT
ATCGCTAGAGCCCTAGTAATGAACCCTGAATTCGTTATTGCTGATGAGCCGATTTCAGCTTTGGACGTTTCCGTTCGCGC
ACAGGTTTTAAACCTTCTCAAACGGATGCAAGCCGAAAAAGGTTTGACTTATCTCTTCATTGCCCATGATCTTTCAGTCG
TTCGCTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGGGTTATTGTAGAAGTTGCAGAAACAGAAGAACTGTTTAAT
AACCCAATTCATCCCTACACCCAATCTTTGTTATCAGCCGTGCCTATCCCAGATCCAATTTTAGAGCGTCAAAAAGAACT
TGTTGTCTATCATCCAGACCAACATGATTATACATTAGATAAGCCATCAATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTGAAAAATATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

• ABC transporter (ABC_tran) (25-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	82.026	99.674	0.818
amiF	Streptococcus thermophilus LMD-9	81.699	99.674	0.814
amiF	Streptococcus salivarius strain HSISS4	81.699	99.674	0.814