Detailed information NTG1137940

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: DQM92_RS07890
• Genome accession: NZ_LS483350
• Coordinates: 1576654..1577100 (-)
• Length: 148 a.a.
• NCBI ID: WP_001790850.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain NCTC11940
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1574748..1575920	1576654..1577100	flank	734

Gene organization within MGE regions

Location: 1574748..1577100

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM92_RS07875 (NCTC11940_01474)	-	1574748..1575920 (-)	1173	WP_000195429.1	IS256-like element IS256 family transposase	-
DQM92_RS07880 (NCTC11940_01475)	comGF	1575998..1576450 (-)	453	WP_111724816.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQM92_RS07885 (NCTC11940_01476)	comGE	1576368..1576667 (-)	300	WP_000844413.1	hypothetical protein	Machinery gene
DQM92_RS07890 (NCTC11940_01477)	comGD	1576654..1577100 (-)	447	WP_001790850.1	competence type IV pilus minor pilin ComGD	Machinery gene

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17213.42 Da
• Isoelectric Point: 10.3682

>NTDB_id=1137940 DQM92_RS07890 WP_001790850.1 1576654..1577100(-) (comGD) [Staphylococcus aureus strain NCTC11940]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide

• Length: 447 bp

>NTDB_id=1137940 DQM92_RS07890 WP_001790850.1 1576654..1577100(-) (comGD) [Staphylococcus aureus strain NCTC11940]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Staphylococcus aureus MW2	99.324	100	0.993
comGD	Staphylococcus aureus N315	99.324	100	0.993