Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   DQM92_RS07880 Genome accession   NZ_LS483350
Coordinates   1575998..1576450 (-) Length   150 a.a.
NCBI ID   WP_111724816.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC11940     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1574748..1575920 1575998..1576450 flank 78


Gene organization within MGE regions


Location: 1574748..1576450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM92_RS07875 (NCTC11940_01474) - 1574748..1575920 (-) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  DQM92_RS07880 (NCTC11940_01475) comGF 1575998..1576450 (-) 453 WP_111724816.1 competence type IV pilus minor pilin ComGF Machinery gene

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17635.04 Da        Isoelectric Point: 10.0697

>NTDB_id=1137938 DQM92_RS07880 WP_111724816.1 1575998..1576450(-) (comGF) [Staphylococcus aureus strain NCTC11940]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMFISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKDKVRIIV

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1137938 DQM92_RS07880 WP_111724816.1 1575998..1576450(-) (comGF) [Staphylococcus aureus strain NCTC11940]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGTTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAAGATAAAGTCCGTATAATTGTGTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(66-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

95.333

100

0.953
  comGF Staphylococcus aureus N315

92

100

0.92

Multiple sequence alignment