Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   DQM48_RS10055 Genome accession   NZ_LS483348
Coordinates   1965596..1966378 (+) Length   260 a.a.
NCBI ID   WP_020917670.1    Uniprot ID   A0AB33AQ01
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1960596..1971378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS10025 - 1961384..1962746 (+) 1363 Protein_1929 IS3 family transposase -
  DQM48_RS10045 (NCTC8738_02127) rlmH 1963584..1964063 (-) 480 WP_020917668.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQM48_RS10050 (NCTC8738_02128) htrA 1964278..1965528 (+) 1251 WP_020917669.1 S1C family serine protease Regulator
  DQM48_RS10055 (NCTC8738_02129) spo0J 1965596..1966378 (+) 783 WP_020917670.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29824.64 Da        Isoelectric Point: 9.6238

>NTDB_id=1137848 DQM48_RS10055 WP_020917670.1 1965596..1966378(+) (spo0J) [Streptococcus lutetiensis strain NCTC8738]
MIETLNLIPIDDIAPNPYQPRLKFKPEELEELSRSIKANGLIQPIIVRKSDIFGYELIAGERRLKASKMAGLSEIPAIIK
DITNKESMQLAIVENLQRSDLNPIEEAKAYQQLLDKNQMTHEELAQFMGKSRPYITNCLRLLNLPTIISHAVEKGELSQG
HARVLLTLKDEKEQEKWYQKILNEDMSVRKLEQAVKSTKKKKTSSKVSKKDIFIRHQEEELSKLLGLPVTLSLSKSGFKG
DLQLHFQSEEDLNRIINRLK

Nucleotide


Download         Length: 783 bp        

>NTDB_id=1137848 DQM48_RS10055 WP_020917670.1 1965596..1966378(+) (spo0J) [Streptococcus lutetiensis strain NCTC8738]
ATGATTGAAACACTTAATCTCATACCTATTGACGATATTGCACCAAATCCTTATCAACCTCGCTTGAAATTTAAACCAGA
AGAATTAGAAGAACTTTCTCGCTCAATAAAGGCAAACGGCCTCATACAGCCGATAATCGTCCGTAAATCAGATATTTTTG
GTTATGAGCTCATTGCAGGCGAAAGACGTCTTAAAGCATCAAAAATGGCTGGTTTAAGCGAAATTCCTGCAATTATAAAA
GATATTACTAATAAAGAAAGCATGCAGCTTGCTATTGTCGAAAATTTGCAGCGCTCTGACCTTAATCCTATTGAAGAAGC
CAAGGCTTATCAGCAATTGCTCGATAAAAATCAAATGACCCATGAAGAATTAGCACAATTTATGGGAAAATCTCGTCCTT
ATATTACGAATTGCTTGCGCTTATTGAATTTACCGACGATTATTTCTCATGCCGTCGAAAAAGGTGAACTTTCTCAAGGA
CATGCGCGTGTGCTGCTGACACTTAAGGACGAAAAAGAGCAGGAGAAGTGGTACCAAAAAATTCTGAACGAGGATATGAG
CGTTCGCAAACTCGAACAAGCTGTAAAATCTACTAAAAAGAAAAAAACATCTTCTAAAGTAAGCAAAAAAGATATTTTTA
TCCGTCATCAAGAAGAAGAATTATCAAAATTATTAGGTCTTCCTGTCACCTTATCACTTTCTAAAAGTGGCTTTAAAGGA
GACTTACAATTACATTTTCAATCAGAAGAAGACTTAAACAGAATTATCAACAGGCTAAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(148-196)

ParB/Sulfiredoxin domain (ParB_N)

(8-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

61.538

100

0.615

Multiple sequence alignment