Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQM73_RS01205 Genome accession   NZ_LS483346
Coordinates   218842..220218 (+) Length   458 a.a.
NCBI ID   WP_080561413.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11085     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 213842..225218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS01175 (NCTC11085_00229) amiA 214185..216158 (-) 1974 WP_002926234.1 peptide ABC transporter substrate-binding protein Regulator
  DQM73_RS01180 (NCTC11085_00230) - 216386..217075 (+) 690 WP_002934505.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DQM73_RS01190 (NCTC11085_00231) - 217342..217791 (+) 450 WP_002926230.1 8-oxo-dGTP diphosphatase -
  DQM73_RS01195 (NCTC11085_00232) - 217875..218318 (+) 444 WP_002926229.1 dUTP diphosphatase -
  DQM73_RS01200 (NCTC11085_00233) - 218320..218835 (+) 516 WP_002926228.1 histidine phosphatase family protein -
  DQM73_RS01205 (NCTC11085_00234) radA 218842..220218 (+) 1377 WP_080561413.1 DNA repair protein RadA Machinery gene
  DQM73_RS01210 (NCTC11085_00235) - 220327..221043 (+) 717 WP_002916623.1 TIGR00266 family protein -
  DQM73_RS01215 (NCTC11085_00236) - 221157..221852 (+) 696 WP_002926226.1 TIGR00266 family protein -
  DQM73_RS01220 (NCTC11085_00237) - 222002..222499 (+) 498 WP_002922537.1 carbonic anhydrase -
  DQM73_RS01225 (NCTC11085_00238) - 222597..223463 (+) 867 WP_002899165.1 ABC transporter permease -
  DQM73_RS01230 (NCTC11085_00239) - 223460..224218 (+) 759 WP_002926225.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50044.45 Da        Isoelectric Point: 6.0322

>NTDB_id=1137678 DQM73_RS01205 WP_080561413.1 218842..220218(+) (radA) [Streptococcus sanguinis strain NCTC11085]
MTIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGIVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTE
IEKIKPDFLIIDSIQTVVSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLKVTDNIQVIGVTTIGEVLKKVFSGLK

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1137678 DQM73_RS01205 WP_080561413.1 218842..220218(+) (radA) [Streptococcus sanguinis strain NCTC11085]
ATCACCATCGCTAAGAAAAAAACGACCTTTGTCTGTCAAAATTGTGAATATCATTCGCCGAAGTATCTAGGCCGTTGTCC
TAACTGCGGCTCTTGGTCTTCTTTCGTTGAGGAAGTAGAAGCTGCAGAAGTCAAGCATGCCCGTGTTTCCTTGACAGGCG
AAAAGACCCGGCCCATGAAGCTGGCTGAGGTCACTTCGATTGATGTCAACCGGACCAAGACAGAAATGGATGAGTTCAAC
CGTGTGCTGGGTGGTGGCGTAGTGCCTGGTAGTCTGGTTCTGATTGGCGGGGATCCCGGTATCGGGAAATCCACCCTGCT
TCTGCAAGTATCCACCCAGCTTTCCCACCAGGGCATCGTCCTATATGTCAGTGGGGAGGAATCAGCTGAGCAGATTAAGT
TGCGGGCGGAGCGTCTCGGTGATATTGACAGTGAATTTTATCTTTACGCCGAGACCAATATGCAAAATATCCGCACAGAG
ATTGAGAAAATCAAGCCAGATTTTCTGATTATTGACTCTATACAGACGGTGGTGTCACCGGAAATTTCCAGTGTTCAAGG
TTCTGTTTCTCAGGTTCGAGAGGTAACGGCTGAGCTCATGCAGCTGGCCAAGACCAATAATATTGCGACCTTTATCGTTG
GTCACATGACCAAGGAAGGAACCTTAGCTGGTCCTCGAACTTTGGAGCACATGGTGGACACTGTGCTTTATTTTGAGGGT
GAACGTCAGCATACTTTCCGTATCTTGAGAGCAGTCAAGAACCGCTTTGGTTCGACCAATGAGATTGGTATTTTTGAGAT
GCAGTCTGGCGGGTTAGTTGAGGTTGTCAATCCAAGTGAAGTCTTTCTGGAAGAGCGTCTGGATGGTGCGACAGGCTCAT
CCATCGTTGTGACCATGGAAGGGACGCGGCCGATTTTGGCAGAGGTGCAGGCTTTGGTGACACCGACCATGTTCGGCAAT
GCTAAGCGGACCACGACTGGACTGGACTTTAACCGAGCCAGCCTCATCATGGCGGTTCTGGAAAAACGGGCGGGGCTCCT
TCTGCAAAATCAAGATGCCTACCTCAAGTCAGCTGGTGGCGTCAAGCTAGATGAGCCAGCCATTGATTTGGCAGTAGCGG
TCGCCATTGCTTCCAGCTACAAGGATCTGCCTACCAATCCTCAAGAGTGCTTTATCGGTGAAATTGGCCTGACTGGAGAA
ATTCGCCGGGTTAATCGCATCGAGCAGCGCATCAACGAAGCAGCAAAGCTGGGCTTCACTAAAGTCTACGCTCCTAAAAA
CTCTCTGAACGGCCTCAAAGTTACAGACAATATCCAAGTAATTGGTGTGACGACGATTGGGGAAGTTTTAAAGAAGGTAT
TTTCTGGATTAAAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-427)

AAA domain (AAA_25)

(63-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

90.949

98.908

0.9
  radA Streptococcus pneumoniae Rx1

90.728

98.908

0.897
  radA Streptococcus pneumoniae D39

90.728

98.908

0.897
  radA Streptococcus pneumoniae R6

90.728

98.908

0.897
  radA Streptococcus pneumoniae TIGR4

90.728

98.908

0.897
  radA Streptococcus mitis SK321

90.728

98.908

0.897
  radA Bacillus subtilis subsp. subtilis str. 168

61.79

100

0.618

Multiple sequence alignment