Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DQL69_RS01465 Genome accession   NZ_LS483345
Coordinates   267821..268891 (+) Length   356 a.a.
NCBI ID   WP_111690718.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8231     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 262821..273891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL69_RS01450 (NCTC8231_00289) amiA 263349..265319 (+) 1971 WP_047235658.1 peptide ABC transporter substrate-binding protein Regulator
  DQL69_RS01455 (NCTC8231_00290) amiC 265384..266886 (+) 1503 WP_047235659.1 ABC transporter permease Regulator
  DQL69_RS01460 (NCTC8231_00291) amiD 266886..267812 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  DQL69_RS01465 (NCTC8231_00292) amiE 267821..268891 (+) 1071 WP_111690718.1 ABC transporter ATP-binding protein Regulator
  DQL69_RS01470 (NCTC8231_00293) amiF 268884..269807 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  DQL69_RS09370 - 269845..269928 (-) 84 Protein_235 IS3 family transposase -
  DQL69_RS09375 - 270062..270372 (-) 311 Protein_236 IS3 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39671.77 Da        Isoelectric Point: 5.6978

>NTDB_id=1137637 DQL69_RS01465 WP_111690718.1 267821..268891(+) (amiE) [Streptococcus pyogenes strain NCTC8231]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLYPEAPKVQKPEVIQGLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1137637 DQL69_RS01465 WP_111690718.1 267821..268891(+) (amiE) [Streptococcus pyogenes strain NCTC8231]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATCGGTAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTCATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTATACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGGTTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.389

100

0.772
  amiE Streptococcus thermophilus LMG 18311

75.278

100

0.761
  amiE Streptococcus thermophilus LMD-9

75.278

100

0.761
  oppD Streptococcus mutans UA159

56.677

94.663

0.537

Multiple sequence alignment