Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQL21_RS06575 Genome accession   NZ_LS483343
Coordinates   1282065..1283873 (-) Length   602 a.a.
NCBI ID   WP_018030161.1    Uniprot ID   -
Organism   Streptococcus ferus strain NCTC12278     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1277065..1288873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL21_RS06550 (NCTC12278_01307) - 1277093..1277593 (-) 501 WP_018030156.1 LURP-one-related/scramblase family protein -
  DQL21_RS06555 (NCTC12278_01309) prsA 1277831..1278817 (-) 987 WP_018030157.1 peptidylprolyl isomerase PrsA -
  DQL21_RS06560 (NCTC12278_01310) - 1278879..1279586 (-) 708 WP_018030158.1 O-methyltransferase -
  DQL21_RS06565 (NCTC12278_01311) - 1279869..1280486 (-) 618 WP_026161925.1 HAD-IA family hydrolase -
  DQL21_RS06570 (NCTC12278_01312) - 1280703..1282004 (+) 1302 WP_018030160.1 hypothetical protein -
  DQL21_RS06575 (NCTC12278_01313) pepF 1282065..1283873 (-) 1809 WP_018030161.1 oligoendopeptidase F Regulator
  DQL21_RS06580 (NCTC12278_01314) - 1283873..1284841 (-) 969 WP_018030162.1 competence protein CoiA -
  DQL21_RS06585 (NCTC12278_01315) - 1284894..1285613 (-) 720 WP_018030163.1 pseudouridine synthase -
  DQL21_RS06590 (NCTC12278_01316) - 1285681..1288365 (-) 2685 WP_018030164.1 cation-translocating P-type ATPase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69375.29 Da        Isoelectric Point: 4.7493

>NTDB_id=1137605 DQL21_RS06575 WP_018030161.1 1282065..1283873(-) (pepF) [Streptococcus ferus strain NCTC12278]
MSENRSHLKQEETWDLATIFATDQEWENEWSDLSKALDLAASNAGHLLESSHSLLTITELYLALARRLEKLYVYASMKND
QDTTVSYYQELQAKATAIYAKFSQTFAFFEPEFRNLSEDLYQTFLSESPELKAYAHFYDKLFKQKEHVLSQKEEELLAGA
SEIFGAASETFDILDNADIVFPSIVDAEGNTVEVTHGNFITLMESKDRKVRQAAYEAMYSIYQQYQHTYAKTLQTNVKVN
NFKARTRHYRSARQAALSANFIPESVYDALLVSVNKHLPLLHRYIRLRQDILGLDDLKMYDLYTPLSTADLSYSYEQALE
KAESVLAVFGQEYTERVRRAFRERWIDVRENKGKRSGAYSGGSYDTNAFMLLNWQDTLDYLFTLVHETGHSLHSTFTREN
QPYVYGDYAIFLAEIASTTNENILTESLLKEVSDDKTRFAVLNHYLDGFKGTVFRQTQFAEFEQAIYQADQEGEVLTSQF
LNQLYAELNEKYYGLSKEDNPDIQYEWARIPHFYYNFYVYQYATGFAAASYLADKIVHGSQEDKDRYLDYLKAGSSDYAL
NVIAKAGVDMTKTDYLDAAFAVFEERLTELEALVAKGVHRGS

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1137605 DQL21_RS06575 WP_018030161.1 1282065..1283873(-) (pepF) [Streptococcus ferus strain NCTC12278]
ATGTCAGAAAACCGCAGCCATCTTAAGCAAGAAGAAACTTGGGATTTGGCCACTATATTTGCTACTGATCAGGAATGGGA
AAATGAATGGTCAGACCTGTCAAAAGCACTTGACCTTGCAGCGTCGAATGCCGGCCATCTTTTAGAGTCCAGCCATTCTC
TGCTGACCATTACAGAGCTGTATCTGGCGCTTGCTCGCCGGTTGGAAAAACTTTACGTCTACGCCTCTATGAAAAATGAC
CAAGACACGACTGTCAGTTATTATCAGGAATTGCAGGCAAAAGCAACAGCTATTTATGCCAAGTTTAGTCAAACTTTCGC
CTTTTTTGAGCCTGAATTTAGAAACCTGTCTGAAGACCTCTATCAGACCTTTCTAAGCGAAAGCCCTGAACTTAAAGCTT
ATGCTCATTTTTACGACAAACTCTTTAAGCAAAAAGAACACGTGCTGTCGCAGAAAGAAGAAGAGCTCTTGGCTGGTGCG
AGTGAAATATTTGGGGCGGCCAGTGAAACGTTTGACATTTTGGATAATGCTGATATTGTTTTTCCAAGTATTGTAGACGC
AGAAGGCAATACAGTCGAGGTCACCCACGGCAATTTTATAACCTTGATGGAATCCAAGGACAGAAAAGTGCGACAAGCAG
CCTATGAAGCCATGTACAGTATTTATCAACAATACCAGCATACCTATGCGAAGACGCTTCAAACTAACGTCAAGGTCAAT
AATTTTAAGGCTCGGACGCGTCATTACAGAAGTGCCCGTCAGGCGGCGCTGTCGGCAAATTTTATCCCAGAGTCTGTTTA
CGATGCCTTGCTAGTGTCTGTAAACAAACATCTGCCTCTGTTGCATCGTTACATCAGGCTTCGCCAGGATATTTTAGGGC
TGGATGATTTAAAAATGTATGACCTTTATACGCCTTTGTCAACGGCTGACTTGAGCTACTCTTATGAGCAGGCGCTTGAA
AAAGCTGAGTCGGTTTTAGCTGTTTTTGGCCAGGAATATACTGAACGGGTCAGACGCGCTTTTAGGGAGCGTTGGATTGA
TGTTCGTGAGAATAAGGGAAAACGCTCAGGTGCTTATTCCGGCGGCTCTTATGATACCAATGCCTTTATGCTTTTAAATT
GGCAGGATACACTTGATTATCTCTTTACACTTGTGCATGAGACGGGCCATTCGCTACATTCGACCTTTACACGTGAAAAT
CAGCCTTATGTTTATGGTGACTACGCTATCTTTTTGGCAGAAATTGCTTCAACAACGAATGAAAATATCCTGACGGAGAG
CCTGTTGAAGGAAGTAAGCGATGACAAGACCCGATTTGCTGTGTTGAATCATTATTTAGATGGCTTTAAAGGCACCGTCT
TTCGTCAGACCCAGTTCGCAGAATTTGAACAGGCCATCTATCAGGCAGATCAGGAAGGGGAAGTTCTGACTAGCCAATTC
TTGAATCAGCTTTATGCGGAACTGAATGAAAAATATTATGGCCTCAGCAAGGAAGATAATCCAGACATTCAATATGAATG
GGCCCGCATACCGCATTTTTATTACAATTTCTATGTTTACCAATACGCAACTGGCTTTGCGGCAGCTAGTTATCTGGCTG
ATAAAATTGTTCACGGCAGTCAGGAAGATAAGGATCGCTATCTGGACTATCTTAAGGCAGGCAGCTCGGACTATGCCCTC
AATGTTATTGCCAAAGCAGGTGTGGATATGACCAAAACGGACTACCTAGATGCAGCCTTCGCCGTTTTTGAAGAACGTTT
GACCGAACTAGAAGCCTTAGTCGCTAAAGGGGTTCATAGAGGTAGTTGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.616

99.502

0.693

Multiple sequence alignment