Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DQL21_RS05350 Genome accession   NZ_LS483343
Coordinates   1030363..1032165 (-) Length   600 a.a.
NCBI ID   WP_018029918.1    Uniprot ID   A0A2X3W9H1
Organism   Streptococcus ferus strain NCTC12278     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1025363..1037165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL21_RS05325 (NCTC12278_01058) - 1025962..1026087 (-) 126 Protein_995 lipid hydroperoxide peroxidase -
  DQL21_RS05330 (NCTC12278_01059) - 1026132..1027391 (-) 1260 WP_111703016.1 Mbeg1-like protein -
  DQL21_RS05335 (NCTC12278_01060) - 1027394..1027792 (-) 399 WP_018029915.1 DUF1310 family protein -
  DQL21_RS05340 (NCTC12278_01061) tpx 1027941..1028420 (-) 480 WP_018029916.1 thiol peroxidase -
  DQL21_RS05345 (NCTC12278_01062) rcrQ 1028616..1030373 (-) 1758 WP_018029917.1 ABC transporter ATP-binding protein Regulator
  DQL21_RS05350 (NCTC12278_01063) rcrP 1030363..1032165 (-) 1803 WP_018029918.1 ABC transporter ATP-binding protein Regulator
  DQL21_RS05355 (NCTC12278_01064) - 1032149..1032613 (-) 465 WP_018029919.1 MarR family winged helix-turn-helix transcriptional regulator -
  DQL21_RS05360 - 1032788..1033126 (-) 339 WP_111703017.1 GNAT family N-acetyltransferase -
  DQL21_RS05365 (NCTC12278_01067) gdhA 1033474..1034823 (-) 1350 WP_018029922.1 NADP-specific glutamate dehydrogenase -
  DQL21_RS05370 (NCTC12278_01068) - 1034962..1035333 (-) 372 WP_018029923.1 VOC family protein -
  DQL21_RS05375 (NCTC12278_01069) - 1035472..1035981 (+) 510 WP_018029924.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66589.16 Da        Isoelectric Point: 7.0026

>NTDB_id=1137602 DQL21_RS05350 WP_018029918.1 1030363..1032165(-) (rcrP) [Streptococcus ferus strain NCTC12278]
MLKIFKRLNTKEWGMVLLSTLLVGLAVWMDLKTPEYMSDITTLLQTKGTKVSDIMDPGSKMLLFSFGSFFTSVLVGFLAA
RTAASFTTRLRSDIFHQVMDYSEAEVKRFSIPSLLTRTTNDLTQLQLLITMGMQVVTKGPIMAIWAMTKIWGKSSEWTMS
VGVAVFIVMILLSVLLFVAFPKQRKVQGLTDALNAITRESLTGVRVVRAYNAEDYQDNKFKAANDNLTRLNLFVYRLMSL
MNPVMTLVSSGLTLAIYWIGAYLINDVKIPQTSMAAAASAIKDRVSVFSDMVVFSSYAMQVVIGFMMMVAIFIILPRALV
SAKRINEVLDLEPSVIFRASSATEDGQTGEIEFHDVSFRYSKNSRAVIEHVSFKAEAGQTVAFIGSTGSGKSTLVNLIPR
FYDVTEGKILVDGVNVKDYSHQDLNDKVGYIPQKAVLFSGTVRSNMTFGQSKASPLTDEAIWQALELAQAKDFIEAKEEG
LDSPVAQSGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRLLRQTLAEETKDMTKLIVAQRISTIMDADQIL
VLDQGKVVGQGTHKELLESNAIYQEIAYSQLSKEELDNEN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1137602 DQL21_RS05350 WP_018029918.1 1030363..1032165(-) (rcrP) [Streptococcus ferus strain NCTC12278]
ATGCTGAAGATTTTTAAACGATTAAATACCAAAGAATGGGGGATGGTTCTGCTCAGTACACTTTTAGTGGGACTGGCTGT
TTGGATGGACCTCAAAACCCCTGAATACATGTCAGATATTACAACCCTGCTTCAAACCAAGGGGACAAAGGTATCTGATA
TTATGGATCCAGGCTCCAAGATGCTCCTCTTTTCATTTGGCAGCTTTTTCACCTCGGTTTTAGTTGGTTTTCTTGCAGCT
AGAACAGCGGCCAGCTTTACCACTCGTTTGCGGTCTGATATTTTTCATCAGGTCATGGATTACTCAGAGGCGGAGGTCAA
GCGCTTTTCAATCCCTAGTCTCTTGACACGGACAACGAATGATTTAACCCAGCTCCAACTGTTAATTACGATGGGGATGC
AGGTGGTGACCAAAGGGCCAATCATGGCAATTTGGGCCATGACCAAAATCTGGGGTAAAAGCAGTGAATGGACGATGTCT
GTTGGGGTTGCTGTTTTTATCGTAATGATTCTTTTAAGTGTTTTGCTTTTTGTTGCTTTTCCTAAACAGCGCAAGGTACA
GGGACTAACAGATGCTCTTAATGCTATTACAAGAGAATCCTTGACAGGGGTTCGTGTCGTTCGTGCTTATAATGCCGAAG
ATTATCAGGACAATAAATTTAAGGCTGCCAATGACAATTTGACGAGGCTTAACCTCTTTGTTTACCGTCTCATGTCTTTG
ATGAATCCAGTCATGACCTTGGTTTCGAGTGGTCTGACCTTAGCCATCTATTGGATAGGGGCCTACCTGATTAATGATGT
CAAGATTCCTCAAACCAGCATGGCTGCTGCAGCCTCAGCGATAAAAGACAGAGTATCCGTCTTTAGCGATATGGTTGTTT
TCTCTTCTTATGCCATGCAGGTCGTCATCGGCTTTATGATGATGGTGGCTATCTTTATCATTCTTCCGAGAGCCTTGGTT
TCTGCTAAGCGGATCAATGAAGTCTTGGATCTAGAACCTTCTGTCATCTTTAGAGCATCATCTGCGACAGAAGATGGGCA
GACAGGAGAAATTGAATTTCACGATGTTTCTTTTCGTTATAGTAAAAATTCACGTGCGGTTATTGAGCATGTTTCGTTCA
AAGCTGAGGCAGGTCAGACGGTTGCCTTTATCGGATCTACTGGATCTGGTAAGTCAACCTTGGTTAATTTAATTCCGCGT
TTTTACGATGTGACGGAAGGAAAAATTTTAGTGGATGGGGTTAATGTGAAAGATTATTCTCATCAGGATTTGAATGATAA
AGTCGGTTATATCCCTCAAAAAGCAGTTCTCTTTAGCGGTACGGTCAGATCGAACATGACCTTTGGCCAAAGTAAAGCCT
CTCCTTTGACAGATGAGGCGATTTGGCAGGCTCTTGAATTGGCACAAGCCAAAGACTTTATTGAAGCCAAAGAAGAGGGG
CTGGACAGTCCTGTGGCTCAGTCCGGTTCTAACTTTTCCGGCGGTCAGAAACAGAGATTGGCCATCGCCAGAGCCCTTGC
CCGCAAACCTGAGATTCTGATTTTCGATGATTCCTTCTCGGCGCTTGATTACAAGACGGATCGCCTGCTCCGTCAAACTT
TGGCTGAGGAAACGAAAGATATGACAAAATTGATCGTGGCTCAGCGAATTTCAACCATTATGGATGCAGATCAGATCTTA
GTCTTAGACCAAGGGAAGGTTGTTGGTCAGGGAACCCATAAAGAATTGCTTGAAAGCAATGCTATTTATCAGGAAATTGC
TTACTCACAATTATCTAAGGAGGAGTTGGACAATGAAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(369-518)

ABC transporter transmembrane region (ABC_membrane)

(36-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3W9H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

81.773

99.667

0.815

Multiple sequence alignment