Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   DQL21_RS03855 Genome accession   NZ_LS483343
Coordinates   739718..740602 (-) Length   294 a.a.
NCBI ID   WP_018029621.1    Uniprot ID   A0A2X3VYA5
Organism   Streptococcus ferus strain NCTC12278     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 734718..745602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL21_RS03830 (NCTC12278_00756) - 735342..736070 (+) 729 WP_018029615.1 acyl-ACP thioesterase domain-containing protein -
  DQL21_RS03835 (NCTC12278_00757) - 736230..737003 (+) 774 WP_018029616.1 TIGR01457 family HAD-type hydrolase -
  DQL21_RS03840 (NCTC12278_00758) - 736993..737643 (+) 651 WP_018029617.1 TIGR01906 family membrane protein -
  DQL21_RS03845 (NCTC12278_00759) - 737624..738796 (+) 1173 WP_026161867.1 MFS transporter -
  DQL21_RS03850 (NCTC12278_00760) ndk 738931..739350 (+) 420 WP_018029619.1 nucleoside-diphosphate kinase -
  DQL21_RS09695 - 739386..739587 (-) 202 Protein_707 ISL3 family transposase -
  DQL21_RS03855 (NCTC12278_00761) irvR 739718..740602 (-) 885 WP_018029621.1 XRE family transcriptional regulator Regulator
  DQL21_RS03860 (NCTC12278_00762) - 740935..741171 (+) 237 WP_018029622.1 helix-turn-helix transcriptional regulator -
  DQL21_RS03865 (NCTC12278_00763) - 741333..743075 (+) 1743 WP_018029623.1 GbpC/Spa domain-containing protein -
  DQL21_RS03870 (NCTC12278_00764) lepA 743401..745233 (+) 1833 WP_018029624.1 translation elongation factor 4 -
  DQL21_RS03875 (NCTC12278_00765) - 745254..745508 (-) 255 WP_018029625.1 metal-sensitive transcriptional regulator -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33178.83 Da        Isoelectric Point: 7.5430

>NTDB_id=1137596 DQL21_RS03855 WP_018029621.1 739718..740602(-) (irvR) [Streptococcus ferus strain NCTC12278]
MGRGKLTPQDLEAMKTISINLQRLLSESGMKQSHVAAVLNIPTSSFNEYVKGKSLPKAGNIQKIADFFGLKKSDIDPRFS
SENTSAILKQISALANQLEPERQKSLLDYCRHQVAEQQAQTKANAEPSKSSKKKFAAYQYQEIVDKFIADEMASQDIIYL
DHVRNAQDLYHAIGRHYENVVLYGEVSAGTGIWVGQERQETIQYPSPVPEHDLALKVNGNSMEPLFYDGDLVFVKKTKTI
HHGQIIVVIVNNEAYVKKLYRKNKEIRLISLNPDYDDIILKKDDNIEIIGTVIT

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1137596 DQL21_RS03855 WP_018029621.1 739718..740602(-) (irvR) [Streptococcus ferus strain NCTC12278]
ATGGGACGTGGAAAATTAACACCACAAGATTTAGAAGCTATGAAAACGATTTCTATTAATTTACAAAGACTTCTATCTGA
AAGCGGAATGAAGCAATCTCATGTGGCTGCTGTCCTTAATATTCCCACAAGCAGTTTTAATGAATATGTAAAAGGAAAAA
GTCTGCCAAAGGCGGGAAACATTCAGAAAATTGCTGACTTCTTCGGTTTAAAAAAATCAGACATTGATCCTAGATTTTCC
AGTGAAAACACTTCCGCCATTCTCAAGCAAATTAGCGCTTTGGCTAATCAGTTAGAACCTGAACGGCAGAAAAGCCTCCT
TGACTATTGTCGTCATCAGGTAGCTGAGCAGCAAGCCCAAACTAAAGCAAATGCAGAGCCTTCCAAGAGTTCTAAAAAGA
AATTTGCTGCTTACCAATATCAAGAAATCGTTGACAAATTCATCGCAGATGAAATGGCTAGCCAAGATATCATCTATTTA
GACCACGTCAGAAATGCTCAAGATTTGTATCATGCTATTGGCCGTCATTATGAAAATGTCGTACTTTATGGAGAAGTCTC
TGCCGGTACTGGCATCTGGGTTGGACAGGAAAGGCAGGAAACAATTCAATACCCATCACCTGTTCCAGAGCATGATTTAG
CTCTAAAAGTAAACGGAAACAGTATGGAGCCACTGTTTTATGATGGTGACCTTGTTTTTGTTAAGAAAACAAAAACTATT
CATCATGGACAAATTATCGTTGTCATTGTGAATAATGAAGCCTATGTCAAAAAACTTTACCGAAAAAACAAGGAAATTCG
ACTAATTTCTCTCAATCCAGATTATGATGATATCATCTTAAAGAAGGATGACAATATTGAAATTATCGGAACAGTCATTA
CATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(27-71)

Peptidase S24-like (Peptidase_S24)

(182-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3VYA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

70.37

100

0.711

Multiple sequence alignment