Detailed information NTG1137566

Bioinformatically predicted

Overview

• Name: oppD
• Type: Regulator
• Locus tag: DQL21_RS01485
• Genome accession: NZ_LS483343
• Coordinates: 267179..268225 (+)
• Length: 348 a.a.
• NCBI ID: WP_018030758.1
• Uniprot ID: A0A2X3VD33
• Organism: Streptococcus ferus strain NCTC12278
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 262179..273225

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL21_RS01470 (NCTC12278_00280)	-	263436..265094 (+)	1659	WP_018030761.1	peptide ABC transporter substrate-binding protein	-
DQL21_RS01475 (NCTC12278_00281)	-	265211..266125 (+)	915	WP_018030760.1	ABC transporter permease	-
DQL21_RS01480 (NCTC12278_00282)	-	266136..267167 (+)	1032	WP_018030759.1	ABC transporter permease	-
DQL21_RS01485 (NCTC12278_00283)	oppD	267179..268225 (+)	1047	WP_018030758.1	ABC transporter ATP-binding protein	Regulator
DQL21_RS01490 (NCTC12278_00284)	amiF	268225..269157 (+)	933	WP_018030757.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38610.25 Da
• Isoelectric Point: 5.4771

>NTDB_id=1137566 DQL21_RS01485 WP_018030758.1 267179..268225(+) (oppD) [Streptococcus ferus strain NCTC12278]
MDKETILQIKDLFVDFRTYAGRVKAIRDVSFDLKKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIKGDILFKGKNLTEL
SENDWSKVRGNEIAMIFQDPMTSLDPTMRIGLQIAEPIMKHEKASKKAALDRALELMKQVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALATNPEILIADEPTTALDVTIQAQILQLMKKIQKTSDSSIIFITHDLGVVAGMADRVAVMYAGKIIEYGTV
EEIFYNPQHPYTWGLLNSMPTTDTASGSLESIPGTPPDLLNPPKGDAFTPRNQYALDIDLEEEPPFFKVSDSHYAATWLL
DDRAPQVTPPDSILKRWDRWATLKGGKR

Nucleotide

• Length: 1047 bp

>NTDB_id=1137566 DQL21_RS01485 WP_018030758.1 267179..268225(+) (oppD) [Streptococcus ferus strain NCTC12278]
ATGGATAAAGAAACGATTTTACAAATAAAAGACCTTTTTGTTGATTTCCGTACCTATGCAGGCAGGGTTAAAGCAATCAG
AGATGTTTCCTTTGACCTTAAAAAGGGAGAAACGCTGGCTATTGTCGGTGAATCTGGATCAGGGAAGTCAGTAACAACGC
GTACCTTGATGGGACTGTCTGCTAAAAATGCCGAAATTAAAGGGGATATTCTCTTTAAAGGAAAAAACTTAACAGAACTG
AGTGAAAATGATTGGTCTAAAGTTCGCGGAAATGAGATAGCCATGATTTTTCAAGATCCGATGACCAGTCTAGATCCGAC
AATGAGAATTGGTCTGCAAATAGCGGAGCCCATTATGAAGCATGAAAAAGCCAGCAAAAAGGCGGCTTTGGATAGAGCTT
TGGAGCTTATGAAACAGGTTGGGATTCCGAATGCTGAGGAGCATATTAATGATTATCCGCATCAGTGGTCGGGTGGGATG
AGACAAAGGGCGGTTATTGCGATTGCTCTGGCTACAAATCCTGAAATCCTGATTGCAGATGAGCCGACAACAGCCCTAGA
TGTGACCATTCAAGCGCAGATTCTTCAGTTGATGAAAAAAATTCAAAAAACCTCTGATTCGTCAATCATCTTCATTACCC
ATGATTTAGGGGTTGTCGCTGGGATGGCTGATCGTGTGGCGGTTATGTACGCAGGTAAAATTATTGAATACGGGACAGTT
GAAGAAATCTTCTATAATCCGCAGCATCCCTATACTTGGGGCTTGCTAAATTCAATGCCAACGACAGATACCGCTTCAGG
CAGTCTCGAATCCATTCCTGGAACACCACCGGATCTGCTAAATCCTCCTAAAGGCGATGCCTTTACCCCTCGTAACCAAT
ATGCTTTGGACATTGATTTAGAAGAAGAACCACCTTTTTTCAAGGTTTCGGATAGCCATTATGCGGCCACTTGGCTGCTC
GATGATCGAGCACCTCAAGTAACTCCGCCGGACTCTATCTTAAAAAGATGGGACCGTTGGGCAACGTTGAAAGGAGGCAA
ACGCTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (235-297)

• ABC transporter (ABC_tran) (27-183)

3D structure

• AlphaFold DB: A0A2X3VD33

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
oppD	Streptococcus mutans UA159	82.471	100	0.825
amiE	Streptococcus salivarius strain HSISS4	57.485	95.977	0.552
amiE	Streptococcus thermophilus LMG 18311	57.186	95.977	0.549
amiE	Streptococcus thermophilus LMD-9	57.186	95.977	0.549