Detailed information NTG1137567

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQL21_RS01490
• Genome accession: NZ_LS483343
• Coordinates: 268225..269157 (+)
• Length: 310 a.a.
• NCBI ID: WP_018030757.1
• Uniprot ID: A0A2X3W4N9
• Organism: Streptococcus ferus strain NCTC12278
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 263225..274157

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL21_RS01470 (NCTC12278_00280)	-	263436..265094 (+)	1659	WP_018030761.1	peptide ABC transporter substrate-binding protein	-
DQL21_RS01475 (NCTC12278_00281)	-	265211..266125 (+)	915	WP_018030760.1	ABC transporter permease	-
DQL21_RS01480 (NCTC12278_00282)	-	266136..267167 (+)	1032	WP_018030759.1	ABC transporter permease	-
DQL21_RS01485 (NCTC12278_00283)	oppD	267179..268225 (+)	1047	WP_018030758.1	ABC transporter ATP-binding protein	Regulator
DQL21_RS01490 (NCTC12278_00284)	amiF	268225..269157 (+)	933	WP_018030757.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 34850.56 Da
• Isoelectric Point: 4.8995

>NTDB_id=1137567 DQL21_RS01490 WP_018030757.1 268225..269157(+) (amiF) [Streptococcus ferus strain NCTC12278]
MTENRKKLVEVKNVSLVFNKGKSNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYDINDGEIDFEGQTVSSL
KGKELFEFRKDAQMIFQDPQASLDGRMKIRDIVAEGLDVHGLALTSKDRDEKVEELLELVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVKLMQQLQADQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGSSDD
VYHHPIHPYTKSLLSAIPEPDPEIERRRVPLVYDPSMEQDGQERSMHEITPGHFVLSTEEEAEGYKKELS

Nucleotide

• Length: 933 bp

>NTDB_id=1137567 DQL21_RS01490 WP_018030757.1 268225..269157(+) (amiF) [Streptococcus ferus strain NCTC12278]
ATGACTGAAAACCGTAAAAAATTAGTTGAAGTCAAAAATGTGTCCTTAGTTTTTAATAAGGGGAAATCTAATGAAGTCAA
GGCAATTGATAACGTTAGTTTTGACATCTATGAAGGTGAAGTTTTTGGACTTGTAGGCGAGTCGGGGTCAGGAAAAACCA
CTATTGGTCGAGCTATTCTAAAACTCTACGACATCAATGACGGTGAAATTGATTTTGAGGGACAGACAGTATCCTCTCTA
AAAGGTAAGGAACTGTTTGAATTTCGCAAAGATGCGCAAATGATTTTCCAAGATCCTCAGGCTAGCCTAGACGGACGTAT
GAAAATCAGAGACATTGTTGCAGAAGGTTTAGATGTGCATGGTTTGGCTCTTACTTCAAAAGACAGGGATGAAAAAGTTG
AAGAACTATTGGAGCTGGTTGGTCTAAATAAAGACCACCTAACTCGCTATCCGCATGAATTTTCAGGCGGTCAGCGTCAG
AGGATAGGAATTGCTCGCGCTCTGGCAGTTGAGCCAAAATTTATTATCGCAGACGAACCTATCTCTGCTTTAGACGTGTC
TATCCAGGCACAGGTTGTTAAATTGATGCAGCAATTACAGGCTGATCAAGGCTTGACTTATTTGTTCATTGCGCATGATT
TGTCAATGGTCAAATATATTTCAGACCGAATCGGTGTCATGCACTGGGGGAAACTGTTAGAAGTAGGTAGCTCAGATGAT
GTTTATCATCATCCAATACATCCCTACACTAAAAGCTTATTATCGGCGATTCCTGAACCTGATCCAGAAATCGAGCGTCG
CCGTGTGCCTTTGGTGTATGACCCTAGTATGGAGCAGGATGGCCAAGAGAGAAGCATGCATGAGATTACGCCTGGACATT
TTGTGCTGTCAACTGAAGAAGAGGCTGAAGGCTATAAAAAAGAATTATCCTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

3D structure

• AlphaFold DB: A0A2X3W4N9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.42	99.032	0.529
amiF	Streptococcus thermophilus LMG 18311	53.094	99.032	0.526
amiF	Streptococcus salivarius strain HSISS4	53.094	99.032	0.526