Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   DQL56_RS08665 Genome accession   NZ_LS483342
Coordinates   1663712..1664746 (-) Length   344 a.a.
NCBI ID   WP_000732713.1    Uniprot ID   A0AAV3JGP6
Organism   Streptococcus agalactiae strain NCTC11930     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1658712..1669746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL56_RS11220 - 1659291..1659443 (-) 153 Protein_1603 translation initiation factor IF-2 N-terminal domain-containing protein -
  DQL56_RS08630 (NCTC11930_01707) - 1659463..1659765 (-) 303 WP_001065560.1 YlxQ-related RNA-binding protein -
  DQL56_RS08635 (NCTC11930_01708) rnpM 1659758..1660054 (-) 297 WP_001140526.1 RNase P modulator RnpM -
  DQL56_RS08640 (NCTC11930_01709) nusA 1660076..1661227 (-) 1152 WP_000032295.1 transcription termination factor NusA -
  DQL56_RS08645 (NCTC11930_01710) rimP 1661263..1661739 (-) 477 WP_041971671.1 ribosome maturation factor RimP -
  DQL56_RS08655 (NCTC11930_01712) trmB 1662229..1662864 (-) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL56_RS08660 (NCTC11930_01713) ccrZ 1662854..1663654 (-) 801 WP_000155919.1 cell cycle regulator CcrZ -
  DQL56_RS08665 (NCTC11930_01714) pptB 1663712..1664746 (-) 1035 WP_000732713.1 ABC transporter permease Regulator
  DQL56_RS08670 (NCTC11930_01715) pptA 1664748..1665473 (-) 726 WP_000912307.1 ABC transporter ATP-binding protein Regulator
  DQL56_RS08675 (NCTC11930_01716) - 1665545..1665730 (+) 186 WP_000368100.1 hypothetical protein -
  DQL56_RS08680 (NCTC11930_01717) - 1665782..1666285 (-) 504 WP_000773453.1 hypothetical protein -
  DQL56_RS08685 (NCTC11930_01718) - 1666621..1667040 (+) 420 WP_000368097.1 HIT family protein -
  DQL56_RS08690 (NCTC11930_01719) - 1667037..1667333 (+) 297 WP_000690175.1 hypothetical protein -
  DQL56_RS08695 (NCTC11930_01720) brpA 1667397..1668704 (-) 1308 WP_000708156.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL56_RS08700 (NCTC11930_01721) - 1668713..1669234 (-) 522 WP_000043146.1 GNAT family N-acetyltransferase -
  DQL56_RS08705 (NCTC11930_01722) tsaE 1669227..1669670 (-) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40206.54 Da        Isoelectric Point: 10.4988

>NTDB_id=1137544 DQL56_RS08665 WP_000732713.1 1663712..1664746(-) (pptB) [Streptococcus agalactiae strain NCTC11930]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGGIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDGILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDSILIRELKPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1137544 DQL56_RS08665 WP_000732713.1 1663712..1664746(-) (pptB) [Streptococcus agalactiae strain NCTC11930]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAACGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAGTTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGGAATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTATTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTAATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGAGTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAAGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGGTATTTTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACAATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ACTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTATTATCATATGCTGTGACAGTAATTGATAGCATACTTATAAGAGAATTGAAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-159)

Bacterial ABC transporter protein EcsB (EcsB)

(147-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

48.547

100

0.485
  pptB Streptococcus salivarius strain HSISS4

48.256

100

0.483

Multiple sequence alignment