Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQL23_RS09025 Genome accession   NZ_LS483341
Coordinates   1866634..1867437 (-) Length   267 a.a.
NCBI ID   WP_060553991.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1861634..1872437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS09010 (NCTC7865_01818) smc 1861778..1865311 (-) 3534 WP_060553989.1 chromosome segregation protein SMC -
  DQL23_RS09015 (NCTC7865_01819) rnc 1865302..1866000 (-) 699 WP_045502139.1 ribonuclease III -
  DQL23_RS09020 (NCTC7865_01820) - 1866243..1866599 (-) 357 WP_060553990.1 YbaN family protein -
  DQL23_RS09025 (NCTC7865_01821) vicX 1866634..1867437 (-) 804 WP_060553991.1 MBL fold metallo-hydrolase Regulator
  DQL23_RS09030 (NCTC7865_01822) micB 1867430..1868791 (-) 1362 WP_053794800.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQL23_RS09035 (NCTC7865_01823) micA 1868784..1869485 (-) 702 WP_008809004.1 response regulator YycF Regulator
  DQL23_RS09040 (NCTC7865_01824) thrS 1869695..1871638 (-) 1944 WP_060553992.1 threonine--tRNA ligase -
  DQL23_RS09045 (NCTC7865_01825) - 1871649..1872275 (-) 627 WP_196755809.1 AAA family ATPase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29760.74 Da        Isoelectric Point: 5.9444

>NTDB_id=1137498 DQL23_RS09025 WP_060553991.1 1866634..1867437(-) (vicX) [Streptococcus gordonii strain NCTC7865]
MTKEGFKYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLSEINRKPEDLDAILVTHEHKDHIHGVGVLARKYNLD
IYANEDTWKAMDSALGKIDISQKHIFEMGKVMTFGDIDIESFGVSHDAAAPQFYRFMKDDKSFVMLTDTGYVSDRMAGVV
ENADGYLIESNHDVEILRSGAYPWSLKQRILSDKGHLSNEDGADTMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
VQADLAVNHDFQVLDTSPDTATPLTSI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1137498 DQL23_RS09025 WP_060553991.1 1866634..1867437(-) (vicX) [Streptococcus gordonii strain NCTC7865]
ATGACTAAGGAAGGTTTTAAGTATAGCATTTTAGCATCTGGATCCAGTGGTAATTGTTTTTATTTAGAAACAGACAAAAA
GAAGATTTTGGTGGATGCAGGACTATCTGGTAAAAAAATCACTAGTCTTCTAAGTGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATTTTAGTAACTCATGAACATAAGGATCACATTCATGGTGTTGGGGTTTTAGCCCGAAAATATAACTTAGAT
ATCTATGCTAACGAAGATACTTGGAAAGCTATGGATAGTGCCTTGGGAAAAATTGATATTAGCCAAAAGCATATTTTTGA
AATGGGTAAGGTTATGACTTTTGGTGATATAGATATTGAAAGTTTTGGTGTTAGCCATGATGCGGCGGCACCACAATTTT
ATCGGTTTATGAAAGACGATAAAAGTTTTGTTATGCTGACGGATACGGGCTATGTGAGTGATCGTATGGCTGGAGTAGTT
GAAAATGCTGATGGATACTTGATTGAGAGTAATCATGATGTAGAAATTTTGCGTAGTGGAGCTTACCCTTGGAGTCTTAA
GCAACGTATTTTATCCGATAAAGGGCATTTATCTAATGAAGATGGTGCTGATACGATGATTCGAACCTTGGGGAACAGAA
CCAAAAAGATTTATCTAGGTCACTTAAGTAAGGAGAATAATATCAAGGAGCTGGCTCATATGACTATGGTTAATCAGCTG
GTTCAAGCTGACTTGGCAGTCAATCATGATTTTCAAGTTTTGGATACTTCTCCTGATACGGCTACGCCTCTGACATCAAT
TTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

80.15

100

0.802

Multiple sequence alignment