Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DQL23_RS03950 Genome accession   NZ_LS483341
Coordinates   827859..829616 (+) Length   585 a.a.
NCBI ID   WP_060553897.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 822859..834616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS03925 (NCTC7865_00784) scrK 823442..824341 (+) 900 WP_045504231.1 fructokinase ScrK -
  DQL23_RS03930 (NCTC7865_00785) - 824390..824800 (+) 411 WP_060553895.1 peptide deformylase -
  DQL23_RS03935 (NCTC7865_00786) - 824810..825379 (+) 570 WP_060553896.1 hypothetical protein -
  DQL23_RS03940 (NCTC7865_00787) - 825652..826110 (+) 459 WP_012130789.1 MarR family winged helix-turn-helix transcriptional regulator -
  DQL23_RS03945 (NCTC7865_00788) rcrP 826103..827869 (+) 1767 WP_060553936.1 ABC transporter ATP-binding protein Regulator
  DQL23_RS03950 (NCTC7865_00789) rcrQ 827859..829616 (+) 1758 WP_060553897.1 ABC transporter ATP-binding protein Regulator
  DQL23_RS03955 (NCTC7865_00790) manA 829776..830720 (+) 945 WP_060553898.1 mannose-6-phosphate isomerase, class I -
  DQL23_RS03960 (NCTC7865_00791) - 831163..832776 (+) 1614 WP_060553899.1 CTP synthase -
  DQL23_RS03965 (NCTC7865_00792) - 832847..833257 (+) 411 WP_060553900.1 GyrI-like domain-containing protein -
  DQL23_RS03970 (NCTC7865_00792) - 833402..833487 (+) 86 WP_060553900.1 tRNA-Leu -
  DQL23_RS03975 (NCTC7865_00794) - 833697..834578 (+) 882 WP_060553901.1 class II fructose-bisphosphate aldolase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64786.76 Da        Isoelectric Point: 5.0060

>NTDB_id=1137475 DQL23_RS03950 WP_060553897.1 827859..829616(+) (rcrQ) [Streptococcus gordonii strain NCTC7865]
MENKKTPLFTQMKPYIKGFQLPFVIAVTGAIISSIITVFGPYKLREITNLITDGLVGEMDLGAISNIGLFLVFLYVVGSL
INYAQGYAISDMIQHFSKRLRTAIAEKINRLPLSYFDSHSQGDTLSRVTNDVDTVGQSLTQSLGTLISSVLLLIAVLFMM
FYTNVVLSFVTIGSVLLGFVFSAVLMAKSQRYFQEQQSNLAAINGYVEEMYSGHNVITSYNGAEKTRLAFNALNQNLYTS
MWKSQFISGIMFPLMNFVGNFGYVMVVIVGAIMAINGSISMGTIVAFMVYVRIFSQPLSQIAQGITTLQSASAAMGRVFE
FLAEGDMEDDSHKLQQLTSVKGHVQFKDVFFGYNPDKTIIHDFSAEAKAGQKIAIVGPTGAGKTTIVNLLMKFYDIERGQ
IMIDGVDIKDMQRSEVHGAFSMVLQDTWLFEGTIKENLIYNQKDITDQAVVEAAKAVGVHHFIMTLPDGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGS
HDQLMEQGGFYADLYNSQFVEEEQE

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=1137475 DQL23_RS03950 WP_060553897.1 827859..829616(+) (rcrQ) [Streptococcus gordonii strain NCTC7865]
ATGGAAAATAAAAAAACACCTTTATTTACCCAGATGAAGCCCTATATTAAAGGCTTCCAGCTTCCTTTTGTCATTGCAGT
AACCGGTGCAATCATCTCTAGTATTATTACAGTCTTTGGTCCTTATAAGTTGCGTGAGATCACGAACTTAATTACAGATG
GTCTAGTAGGTGAGATGGATTTGGGAGCTATCTCAAATATAGGTTTGTTCTTAGTTTTTCTTTATGTTGTGGGCTCTCTT
ATCAATTATGCACAGGGTTATGCTATTTCGGATATGATTCAGCACTTTTCAAAACGTTTGAGAACTGCGATTGCAGAGAA
AATCAACCGCCTGCCATTAAGTTACTTTGATAGTCATTCTCAAGGCGATACCCTATCACGGGTGACAAATGATGTAGATA
CAGTCGGACAATCGTTGACACAGAGCTTGGGGACTCTGATTTCTTCGGTCTTACTTTTAATTGCTGTACTCTTTATGATG
TTTTATACGAATGTTGTACTTTCATTTGTGACGATTGGTTCGGTCTTATTGGGATTTGTTTTCTCAGCAGTTCTGATGGC
GAAATCTCAAAGATATTTCCAAGAACAGCAAAGTAATCTAGCAGCTATTAATGGTTATGTGGAAGAAATGTACTCCGGGC
ACAATGTTATCACTAGTTACAATGGTGCAGAAAAGACGCGCCTGGCCTTCAATGCCCTCAATCAAAATCTGTATACTAGT
ATGTGGAAGTCACAATTTATTTCAGGAATTATGTTTCCACTGATGAACTTTGTTGGTAATTTTGGCTATGTGATGGTTGT
GATTGTAGGTGCTATAATGGCTATTAATGGCTCCATTAGCATGGGAACGATTGTAGCTTTCATGGTCTATGTACGAATTT
TTTCTCAACCTCTTTCCCAAATCGCCCAGGGAATTACAACCCTCCAATCTGCTAGTGCAGCCATGGGACGAGTCTTTGAG
TTTTTAGCAGAAGGGGATATGGAAGATGATTCTCATAAACTTCAACAATTAACAAGTGTAAAAGGACATGTCCAGTTTAA
AGATGTCTTCTTTGGTTACAATCCTGATAAGACTATTATTCACGATTTCTCAGCAGAAGCAAAGGCTGGACAAAAAATTG
CAATTGTTGGCCCTACTGGTGCTGGTAAGACAACAATTGTCAACCTACTCATGAAGTTCTATGATATTGAACGTGGGCAA
ATCATGATTGACGGTGTGGATATCAAGGATATGCAACGCTCAGAAGTTCACGGTGCTTTCTCTATGGTTCTACAAGATAC
ATGGCTTTTTGAAGGGACTATTAAAGAAAACTTGATCTATAATCAGAAAGATATCACAGACCAAGCAGTTGTTGAAGCTG
CAAAAGCGGTTGGTGTCCACCACTTTATCATGACCTTGCCGGACGGCTATGATACAGTTCTGGATGACACAGTCAGCCTT
TCTGTTGGTCAAAAGCAGCTCCTGACTATTGCAAGGGCTCTGCTCAAAGATGCACCACTCCTTATCTTAGATGAGGCGAC
TTCCTCAGTCGATACACGGACAGAGGAATTGATTCAAAAAGCGATGGACAAGCTGATGGAAGGCAGGACTTCCTTTGTCA
TTGCTCACCGCCTATCCACTATTCGCAATGCTGATCTGATCTTAGTTATGCGTGATGGTAATATTATCGAGCAAGGAAGC
CATGACCAGCTCATGGAGCAGGGAGGTTTCTACGCCGATCTTTACAACAGTCAGTTCGTCGAAGAAGAGCAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(24-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

70.619

99.487

0.703

Multiple sequence alignment