Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DQL23_RS03945 Genome accession   NZ_LS483341
Coordinates   826103..827869 (+) Length   588 a.a.
NCBI ID   WP_060553936.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 821103..832869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS03920 (NCTC7865_00783) - 822677..823096 (+) 420 WP_231871957.1 hypothetical protein -
  DQL23_RS03925 (NCTC7865_00784) scrK 823442..824341 (+) 900 WP_045504231.1 fructokinase ScrK -
  DQL23_RS03930 (NCTC7865_00785) - 824390..824800 (+) 411 WP_060553895.1 peptide deformylase -
  DQL23_RS03935 (NCTC7865_00786) - 824810..825379 (+) 570 WP_060553896.1 hypothetical protein -
  DQL23_RS03940 (NCTC7865_00787) - 825652..826110 (+) 459 WP_012130789.1 MarR family winged helix-turn-helix transcriptional regulator -
  DQL23_RS03945 (NCTC7865_00788) rcrP 826103..827869 (+) 1767 WP_060553936.1 ABC transporter ATP-binding protein Regulator
  DQL23_RS03950 (NCTC7865_00789) rcrQ 827859..829616 (+) 1758 WP_060553897.1 ABC transporter ATP-binding protein Regulator
  DQL23_RS03955 (NCTC7865_00790) manA 829776..830720 (+) 945 WP_060553898.1 mannose-6-phosphate isomerase, class I -
  DQL23_RS03960 (NCTC7865_00791) - 831163..832776 (+) 1614 WP_060553899.1 CTP synthase -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 64988.30 Da        Isoelectric Point: 5.4568

>NTDB_id=1137474 DQL23_RS03945 WP_060553936.1 826103..827869(+) (rcrP) [Streptococcus gordonii strain NCTC7865]
MFKLFKRLTSKEIGLILMTVVFICLTVYLELEVPTYMSEITTLLQTPGTTTGDLWVPGLKMLGLSFASLFSLVIAGFVSS
RMASSYTTRLREDIFNRVLDYSNSEIKKFSIPSLLTRTTNDITQIQVFIAMGLQVVIRGSIMAIWAMTKVVGKSDAWLIA
VLVAVAAIILMTIVLVTLAFPKQSIVQTLTDKLNSVTRESLTGIRVVRAYNAEDYQDAKFGAANDEVTSLNIFINRFMSL
FNPIMSGISSGLTLAIYWIGAYLIHSAASADKLGLFSDMVVFMSYGMQVVIGFLLMGALFIVLPRTLVSAGRINKVLALD
SSIKEKDQAKTEGQSKGQVTFEDVSFRYAKNSEAVIEHVSFTAKAGETVAFIGSTGSGKSTLVNLIPRFYDVSEGRILVD
GIDVRDYELKALRNKVGYIPQKAVLFSGTIASNLDFGESMETPLDEEKMWEALELAQAKSFVEEKEAELESEVSQGGTNY
SGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRKELAEQTQHMTKLIVAQRISTIMDADQILVLDNGKVVGQGT
HKELLTTNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=1137474 DQL23_RS03945 WP_060553936.1 826103..827869(+) (rcrP) [Streptococcus gordonii strain NCTC7865]
ATGTTTAAATTATTTAAACGCTTGACGTCAAAAGAAATCGGCCTGATTTTGATGACAGTTGTTTTTATCTGTCTGACCGT
TTATCTAGAGTTGGAAGTGCCAACTTATATGTCGGAAATTACAACCTTACTACAGACACCGGGGACAACGACAGGAGATC
TATGGGTGCCAGGTTTGAAAATGCTAGGCCTATCCTTTGCCAGCTTATTCTCCTTGGTAATAGCTGGTTTTGTGTCCTCT
CGGATGGCTTCTAGCTATACTACCCGCTTGCGTGAGGATATTTTTAATCGTGTCTTGGATTATTCTAATTCAGAGATTAA
AAAATTCTCTATCCCAAGTCTTCTGACCAGAACAACCAACGATATTACCCAAATTCAGGTGTTTATCGCTATGGGACTAC
AAGTTGTTATTCGAGGAAGCATCATGGCGATTTGGGCTATGACGAAGGTTGTTGGCAAATCAGATGCTTGGTTGATCGCT
GTTTTAGTTGCGGTTGCGGCCATTATATTAATGACGATTGTCTTAGTGACTTTGGCTTTTCCAAAGCAATCTATTGTACA
AACCTTGACAGATAAATTAAATAGTGTGACACGTGAGAGTTTGACAGGGATTCGGGTTGTTCGGGCCTATAATGCAGAAG
ATTACCAGGATGCAAAATTTGGTGCAGCAAACGACGAGGTAACTAGCCTTAATATTTTTATTAACCGCTTCATGTCTTTG
TTCAATCCGATTATGAGCGGAATTTCAAGTGGTTTAACGCTGGCTATTTATTGGATTGGAGCTTATTTGATTCATAGCGC
AGCATCTGCTGATAAGCTTGGTCTATTCAGTGATATGGTTGTTTTCATGTCTTATGGTATGCAGGTTGTAATTGGCTTCT
TGCTGATGGGGGCTTTATTTATTGTTTTACCACGTACCCTTGTTTCGGCAGGACGGATTAACAAAGTGTTAGCACTGGAT
AGCAGTATCAAAGAAAAAGATCAAGCAAAGACTGAAGGCCAAAGCAAAGGTCAAGTAACTTTTGAAGATGTTTCTTTCCG
TTATGCCAAAAATTCTGAGGCAGTCATTGAGCATGTTAGCTTTACGGCTAAAGCTGGTGAAACAGTTGCCTTTATTGGAT
CTACTGGTTCAGGTAAATCAACCCTTGTCAATTTGATACCTCGTTTCTATGATGTGTCAGAAGGTAGGATTCTAGTCGAT
GGTATAGATGTCCGTGACTACGAGCTTAAAGCTCTACGTAATAAGGTAGGATATATTCCGCAGAAAGCTGTACTTTTCTC
AGGAACAATTGCTTCAAATTTGGACTTTGGAGAAAGCATGGAAACTCCACTAGATGAAGAGAAAATGTGGGAAGCCCTTG
AACTAGCACAAGCCAAATCATTTGTAGAAGAAAAAGAGGCAGAGCTTGAGTCTGAAGTGTCTCAAGGAGGCACCAACTAT
TCTGGTGGTCAACGCCAACGTCTGGCTATTGCGCGTGCATTGGCCCGTAAGCCGGAAATTTTAATATTTGATGATTCTTT
CTCTGCTTTGGACTATAAGACAGATCGTATTTTACGAAAAGAATTGGCAGAACAGACCCAACATATGACAAAGCTGATTG
TCGCTCAACGAATCTCCACTATTATGGATGCCGATCAAATCCTAGTTCTAGACAATGGTAAAGTCGTTGGACAAGGTACC
CATAAAGAGTTGTTGACTACGAATGAAGTGTACCAAGAAATTGCTTATTCTCAATTATCAAAGGAGGAACTAGAAAATGG
AAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(54-285)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

69

100

0.704

Multiple sequence alignment