Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DQL34_RS02540 Genome accession   NZ_LS483339
Coordinates   471354..471797 (+) Length   147 a.a.
NCBI ID   WP_111679281.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain NCTC12958     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 466354..476797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS02520 (NCTC12958_00530) - 466862..467623 (-) 762 WP_064355432.1 NUDIX domain-containing protein -
  DQL34_RS02525 (NCTC12958_00531) - 467687..468712 (-) 1026 WP_223899673.1 AAA family ATPase -
  DQL34_RS02530 (NCTC12958_00532) gdhA 469144..470496 (+) 1353 WP_002949856.1 NADP-specific glutamate dehydrogenase -
  DQL34_RS02535 (NCTC12958_00533) - 470753..471163 (+) 411 WP_084828532.1 peptide deformylase -
  DQL34_RS02540 (NCTC12958_00534) rcrR 471354..471797 (+) 444 WP_111679281.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DQL34_RS02545 (NCTC12958_00535) rcrP 471801..473615 (+) 1815 WP_111679283.1 ABC transporter ATP-binding protein Regulator
  DQL34_RS02550 (NCTC12958_00536) rcrQ 473605..475383 (+) 1779 WP_024704205.1 ABC transporter ATP-binding protein Regulator
  DQL34_RS02555 (NCTC12958_00537) - 475539..475910 (+) 372 WP_041829277.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17057.45 Da        Isoelectric Point: 9.5242

>NTDB_id=1137351 DQL34_RS02540 WP_111679281.1 471354..471797(+) (rcrR) [Streptococcus thermophilus strain NCTC12958]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIYGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1137351 DQL34_RS02540 WP_111679281.1 471354..471797(+) (rcrR) [Streptococcus thermophilus strain NCTC12958]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCTATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment