Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DQL34_RS02550 Genome accession   NZ_LS483339
Coordinates   473605..475383 (+) Length   592 a.a.
NCBI ID   WP_024704205.1    Uniprot ID   A0A2X3V0E2
Organism   Streptococcus thermophilus strain NCTC12958     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 468605..480383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS02530 (NCTC12958_00532) gdhA 469144..470496 (+) 1353 WP_002949856.1 NADP-specific glutamate dehydrogenase -
  DQL34_RS02535 (NCTC12958_00533) - 470753..471163 (+) 411 WP_084828532.1 peptide deformylase -
  DQL34_RS02540 (NCTC12958_00534) rcrR 471354..471797 (+) 444 WP_111679281.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DQL34_RS02545 (NCTC12958_00535) rcrP 471801..473615 (+) 1815 WP_111679283.1 ABC transporter ATP-binding protein Regulator
  DQL34_RS02550 (NCTC12958_00536) rcrQ 473605..475383 (+) 1779 WP_024704205.1 ABC transporter ATP-binding protein Regulator
  DQL34_RS02555 (NCTC12958_00537) - 475539..475910 (+) 372 WP_041829277.1 hypothetical protein -
  DQL34_RS12445 - 475933..477096 (+) 1164 Protein_451 sensor histidine kinase -
  DQL34_RS02565 (NCTC12958_00539) pyrH 477334..478071 (+) 738 WP_002949867.1 UMP kinase -
  DQL34_RS02570 (NCTC12958_00540) frr 478086..478643 (+) 558 WP_002949868.1 ribosome recycling factor -
  DQL34_RS02575 (NCTC12958_00541) cvfB 478734..479591 (+) 858 WP_100262402.1 RNA-binding virulence regulatory protein CvfB -
  DQL34_RS02580 (NCTC12958_00542) - 479600..479815 (+) 216 WP_002944188.1 YozE family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65080.06 Da        Isoelectric Point: 5.0166

>NTDB_id=1137353 DQL34_RS02550 WP_024704205.1 473605..475383(+) (rcrQ) [Streptococcus thermophilus strain NCTC12958]
MENKPKTSSYKRLKPYIKGFQVPFVLAIVGAIISAVITVIGPDKLKEITNLITDGITPTKMGVIPGIDLDKVGSIALTLA
VLYAISAIVGYLQSFTVVTITQRFSQRFRTAIQKKINTVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKESSQDFKG
LNDKLYNSMWQSQFISGIMMPLMIFVGNFGYVMVCLVGAVKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGSIFEFLEEKDMDDESVKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDKGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIATAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAANGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=1137353 DQL34_RS02550 WP_024704205.1 473605..475383(+) (rcrQ) [Streptococcus thermophilus strain NCTC12958]
ATGGAAAATAAGCCAAAAACATCGTCCTATAAACGTTTAAAACCCTACATTAAAGGTTTCCAAGTTCCCTTTGTCCTTGC
GATTGTTGGAGCCATTATTTCAGCAGTTATAACTGTTATTGGACCTGATAAATTAAAAGAAATCACCAATCTTATTACAG
ATGGGATTACGCCAACTAAGATGGGGGTTATTCCGGGCATCGATTTAGACAAGGTGGGCAGCATTGCTTTAACCTTGGCT
GTTTTATATGCCATTTCAGCCATTGTTGGTTACTTACAAAGTTTTACCGTTGTAACAATTACGCAACGATTTTCACAACG
TTTCCGTACAGCAATCCAAAAGAAAATCAACACCGTACCTCTTAATTATTTTGATAGTCATTCTCAAGGAGACACACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAGGGTCTGGGTACTCTAATTACTTCAAGCGTTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTTACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTTATCATGGGCTTCTCGCAACCACTTTTTAAACGCCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAGAAAGCAGTCAAGATTTCAAGGGG
CTTAATGATAAGCTCTATAATTCTATGTGGCAATCTCAGTTTATCTCTGGTATTATGATGCCACTTATGATTTTCGTCGG
TAACTTTGGTTACGTCATGGTCTGCTTGGTAGGTGCGGTTAAGGTAATTGACGGAAGCCTGACCATCGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTTTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCTATTGGTAGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGTCAAGACAGCTGAGTTGACAGA
TACCAAGGGTCAAGTAGTCTTTGACCACGTTTCCTTTGGTTATACTCCTGAAAAGACTATCATTCATGATTTTTCAGCTC
TTGCCAAGCCAGGACAAAAGATTGCTATTGTTGGTCCGACGGGTGCTGGTAAGACAACCATTGTTAACCTGCTTATGAAA
TTCTATAATATCGATAAAGGCCGTATCACCATTGACGGTGTGGATACGAACGACATGAAGCGTGAGACCGTCCATGATCA
ATTTTCTATGGTACTTCAAGACACTTGGCTCTTTGAAGGAACGATTCGAGATAACTTGATTTACAACCAAGAAAATATCT
CTGACGAGCAAGTTATTGCTACAGCCAAGGCCGTGGGTGTTCATCACTTCATCACCACACTTCCAAAAGGTTACGATACC
TATTTGGATGATTCTGTTACTTTATCAGTTGGTCAGAAACAACTTTTGACCATTGCGCGTGCACTTCTTAAGGATGCCCC
TCTTCTTATCTTGGACGAGGCAACATCATCAGTTGACACACGAACAGAAGAATTGATTCAGAAGGCTATGGACAAGCTTA
TGGAGGGTCGTACATCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCGGACCTCATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGCAGCAAATGGATTCTATGCTGATCTTTATAATAGTCAGTT
TACGGAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(371-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3V0E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.75

100

0.688

Multiple sequence alignment