Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQM35_RS02450 Genome accession   NZ_LS483338
Coordinates   444757..445482 (+) Length   241 a.a.
NCBI ID   WP_038431527.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12064     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 439757..450482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM35_RS02420 (NCTC12064_00476) - 439936..441396 (+) 1461 WP_038431532.1 NCS2 family permease -
  DQM35_RS02425 (NCTC12064_00477) tsaE 441550..442011 (+) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQM35_RS02430 (NCTC12064_00478) - 441986..442510 (+) 525 WP_038431530.1 GNAT family N-acetyltransferase -
  DQM35_RS02435 (NCTC12064_00479) brpA 442519..443802 (+) 1284 WP_002983372.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQM35_RS02440 (NCTC12064_00480) - 443913..444269 (-) 357 WP_002988657.1 hypothetical protein -
  DQM35_RS02445 (NCTC12064_00481) - 444266..444685 (-) 420 WP_002983376.1 HIT family protein -
  DQM35_RS02450 (NCTC12064_00482) pptA 444757..445482 (+) 726 WP_038431527.1 ABC transporter ATP-binding protein Regulator
  DQM35_RS02455 (NCTC12064_00483) - 445485..446519 (+) 1035 WP_002994331.1 ABC transporter permease -
  DQM35_RS02460 (NCTC12064_00484) ccrZ 446583..447374 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQM35_RS02465 (NCTC12064_00485) trmB 447374..448009 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM35_RS02475 (NCTC12064_00487) rimP 448268..448804 (+) 537 WP_002988815.1 ribosome maturation factor RimP -
  DQM35_RS02480 (NCTC12064_00488) nusA 448979..450136 (+) 1158 WP_002994325.1 transcription termination factor NusA -
  DQM35_RS02485 (NCTC12064_00489) rnpM 450152..450448 (+) 297 WP_002983486.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26677.80 Da        Isoelectric Point: 4.7191

>NTDB_id=1137299 DQM35_RS02450 WP_038431527.1 444757..445482(+) (pptA) [Streptococcus pyogenes strain NCTC12064]
MLNIKNLTGGYHNIPVLNDVSFSVDNGELVGLIGLNGAGKSTTINEIIGFLKPYQGSISIDGLTLAENAVAYRQKIGFIP
ETPSLYEELTLSEHINTVAMAYDIDLEVAQKRAQPFLKMFRLTDKLEWFPVNFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLEVEKAKGKSILMSTHVLDSAERMCDRFVILHHGQVRAQGTLADLQEAFGDRSASLNDIYLALTKE
D

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1137299 DQM35_RS02450 WP_038431527.1 444757..445482(+) (pptA) [Streptococcus pyogenes strain NCTC12064]
ATGTTAAACATTAAAAATCTAACAGGAGGATATCACAATATCCCTGTTTTAAACGATGTCTCATTTTCTGTAGACAATGG
AGAGTTAGTCGGTTTGATCGGGCTAAATGGTGCTGGAAAGTCAACAACTATCAACGAAATTATTGGCTTTTTGAAGCCTT
ATCAAGGAAGTATTTCTATTGATGGTTTAACTCTAGCAGAAAATGCAGTTGCTTACCGTCAAAAAATAGGTTTTATCCCA
GAAACTCCTAGTCTCTATGAAGAATTGACCTTATCAGAGCATATCAACACCGTAGCTATGGCTTATGATATCGACTTAGA
AGTGGCACAAAAACGAGCACAACCTTTCTTGAAAATGTTTCGTTTAACTGACAAACTTGAATGGTTTCCTGTCAATTTTT
CTAAAGGGATGAAACAAAAAGTCATGATTATTTGTGCCTTTGTCATTGATCCAAGTCTATTTATTCTTGATGAACCATTC
TTAGGGTTAGACCCTTTAGCTATTTCAGACTTAATCCAAACGCTAGAAGTCGAAAAAGCAAAAGGAAAATCTATTTTGAT
GAGTACACATGTTTTGGACTCTGCTGAAAGAATGTGTGATCGTTTTGTGATTTTGCATCATGGACAAGTTCGTGCCCAAG
GAACTCTTGCTGACTTGCAAGAAGCTTTTGGTGACCGTTCAGCGAGCTTAAATGATATCTATCTTGCATTAACAAAAGAG
GATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

73.222

99.17

0.726
  pptA Streptococcus thermophilus LMD-9

72.385

99.17

0.718

Multiple sequence alignment