Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQL28_RS07025 Genome accession   NZ_LS483334
Coordinates   1391806..1392615 (-) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12050     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1386806..1397615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL28_RS07015 (NCTC12050_01396) smc 1387131..1390670 (-) 3540 WP_111676635.1 chromosome segregation protein SMC -
  DQL28_RS07020 (NCTC12050_01397) rnc 1390671..1391363 (-) 693 WP_002990670.1 ribonuclease III -
  DQL28_RS07025 (NCTC12050_01398) vicX 1391806..1392615 (-) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  DQL28_RS07030 (NCTC12050_01399) vicK 1392619..1393971 (-) 1353 WP_111676637.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQL28_RS07035 (NCTC12050_01400) vicR 1393964..1394674 (-) 711 WP_002985645.1 response regulator YycF Regulator
  DQL28_RS07040 (NCTC12050_01401) - 1394836..1395870 (-) 1035 WP_011284595.1 DUF3114 domain-containing protein -
  DQL28_RS07045 (NCTC12050_01402) - 1395926..1397173 (-) 1248 WP_002995606.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=1137090 DQL28_RS07025 WP_002985641.1 1391806..1392615(-) (vicX) [Streptococcus pyogenes strain NCTC12050]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1137090 DQL28_RS07025 WP_002985641.1 1391806..1392615(-) (vicX) [Streptococcus pyogenes strain NCTC12050]
ATGAATGAGAGTGGTTTTAAATATAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACTATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment