Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OB04_RS05200 Genome accession   NZ_CP009796
Coordinates   971939..972586 (+) Length   215 a.a.
NCBI ID   WP_038428674.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 966939..977586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS05185 (OB04_01020) glpD 967112..968779 (+) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -
  OB04_RS05190 (OB04_01021) pgcA 968909..970654 (+) 1746 WP_038428672.1 phosphoglucomutase -
  OB04_RS05195 (OB04_01022) yhcY 970803..971942 (+) 1140 WP_038428673.1 two-component system sensor histidine kinase YhcY -
  OB04_RS05200 (OB04_01023) vraR 971939..972586 (+) 648 WP_038428674.1 two-component system response regulator YhcZ Regulator
  OB04_RS05205 (OB04_01024) yhdA 972583..973107 (+) 525 WP_021479674.1 FMN-dependent NADPH-azoreductase -
  OB04_RS05210 (OB04_01025) yhdB 973122..973364 (-) 243 WP_003233373.1 YhdB family protein -
  OB04_RS05215 (OB04_01026) yhdC 973565..973888 (+) 324 WP_038428675.1 YqzG/YhdC family protein -
  OB04_RS05220 (OB04_01027) lytF 973930..975396 (-) 1467 WP_038428676.1 peptidoglycan endopeptidase LytF -
  OB04_RS05225 (OB04_01028) nsrR 975549..975989 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24205.88 Da        Isoelectric Point: 6.3039

>NTDB_id=113690 OB04_RS05200 WP_038428674.1 971939..972586(+) (vraR) [Bacillus subtilis strain SG6]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAASLFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEILK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=113690 OB04_RS05200 WP_038428674.1 971939..972586(+) (vraR) [Bacillus subtilis strain SG6]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACTGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCATCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
TAAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.498

97.209

0.433
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.405

Multiple sequence alignment