Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DQL25_RS09910 Genome accession   NZ_LS483330
Coordinates   48260..48355 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8328     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 43260..53355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL25_RS00260 (NCTC8328_00051) - 43985..44914 (+) 930 WP_111703086.1 hypothetical protein -
  DQL25_RS00265 (NCTC8328_00052) - 44917..45486 (+) 570 WP_032460531.1 hypothetical protein -
  DQL25_RS00270 - 45664..45843 (+) 180 WP_032460530.1 hypothetical protein -
  DQL25_RS00275 (NCTC8328_00053) purB 45840..47132 (+) 1293 WP_111703087.1 adenylosuccinate lyase -
  DQL25_RS00280 (NCTC8328_00054) comR 47264..48175 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  DQL25_RS09910 (NCTC8328_00055) comS 48260..48355 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  DQL25_RS00285 (NCTC8328_00056) ruvB 48402..49400 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  DQL25_RS00290 (NCTC8328_00057) - 49538..49975 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  DQL25_RS00295 (NCTC8328_00058) - 49998..50399 (+) 402 WP_011017240.1 MORN repeat-containing protein -
  DQL25_RS00300 (NCTC8328_00059) - 50396..52171 (+) 1776 WP_002987732.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=1136882 DQL25_RS09910 WP_198462994.1 48260..48355(+) (comS) [Streptococcus pyogenes strain NCTC8328]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=1136882 DQL25_RS09910 WP_198462994.1 48260..48355(+) (comS) [Streptococcus pyogenes strain NCTC8328]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452

Multiple sequence alignment