Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   DQL47_RS08115 Genome accession   NZ_LS483328
Coordinates   1695004..1696326 (-) Length   440 a.a.
NCBI ID   WP_111690350.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1690004..1701326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS08105 (NCTC12090_01640) hpf 1693740..1694288 (-) 549 WP_012516134.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DQL47_RS08110 (NCTC12090_01641) - 1694364..1694945 (-) 582 WP_111690349.1 ComF family protein -
  DQL47_RS08115 (NCTC12090_01642) comFA/cflA 1695004..1696326 (-) 1323 WP_111690350.1 DEAD/DEAH box helicase Machinery gene
  DQL47_RS08120 (NCTC12090_01643) - 1696382..1697023 (+) 642 WP_042671178.1 YigZ family protein -
  DQL47_RS08125 (NCTC12090_01644) cysK 1697144..1698070 (+) 927 WP_042671179.1 cysteine synthase A -
  DQL47_RS08130 (NCTC12090_01645) - 1698480..1698845 (-) 366 WP_042671180.1 S1 RNA-binding domain-containing protein -
  DQL47_RS08135 (NCTC12090_01646) - 1698845..1700245 (-) 1401 WP_111690351.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQL47_RS08140 (NCTC12090_01647) - 1700278..1700919 (-) 642 WP_111690352.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 49909.02 Da        Isoelectric Point: 9.6191

>NTDB_id=1136756 DQL47_RS08115 WP_111690350.1 1695004..1696326(-) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MENIENYYGRLLPEGQCPKAVSVWACSLQSMIAKKGTLYCQRCSSLIEKAHQLPSGAYYCRACLVFGRNQSDRPLLYFPP
ASFPKGHYLRWQGQLTTYQAAISHQLTNHVKLKQDTLVHAVTGAGKTEMMYEAIAAVVNKGGWVCIASPRVDVCIELEKR
LSRDFSCQICLMHAESEAYHRSPIIIATTHQLMTFYHAFDLLIIDEVDAFPFVNNRQLNHAAHQAAKADAVTVYLTATST
KDLERKVKQKELVKLTLARRFHGKPLVVPKYQRLFSLLEAINRGKLPRRFITLVKKQRATGYPLLIFFPLIELAEQCCQL
LQKYFPKETIAHASSQSSNRMTIIEQFRQGQITILISTTILERGVTFPTVDVFVLLANHRLYTSSSLIQISGRVGRSLER
PEGQVLFFHDGISQAMLKAVREIKDMNQKGYQNELSTLPQ

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=1136756 DQL47_RS08115 WP_111690350.1 1695004..1696326(-) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
ATGGAGAATATCGAAAATTACTATGGACGTCTTTTACCCGAAGGGCAATGCCCAAAGGCTGTTTCTGTCTGGGCTTGCAG
CTTACAAAGCATGATCGCTAAAAAAGGAACATTATACTGCCAACGCTGTAGCAGCTTAATTGAGAAAGCTCATCAGCTAC
CTAGCGGTGCTTACTATTGTAGAGCCTGTCTCGTTTTTGGTCGAAACCAATCTGATCGCCCCTTGCTCTATTTTCCACCG
GCTTCTTTTCCAAAGGGACATTATCTGAGGTGGCAAGGACAGCTCACGACATATCAGGCAGCTATCTCTCATCAGCTTAC
TAACCATGTTAAGCTCAAGCAAGACACCTTAGTTCATGCGGTTACTGGTGCTGGCAAAACAGAGATGATGTATGAAGCTA
TTGCAGCAGTTGTTAATAAGGGTGGCTGGGTCTGCATTGCTAGTCCACGAGTTGATGTTTGCATAGAGCTTGAAAAACGA
CTATCGCGGGACTTTTCCTGTCAAATCTGCCTTATGCATGCTGAGTCAGAGGCTTATCATAGAAGTCCCATAATCATTGC
CACAACACATCAATTGATGACCTTTTACCATGCTTTTGATCTGCTCATTATTGACGAAGTAGATGCCTTTCCCTTTGTCA
ATAATCGTCAATTAAACCATGCTGCTCATCAGGCTGCAAAAGCAGATGCAGTGACAGTATACCTAACAGCAACCTCTACA
AAAGACTTAGAGCGCAAGGTCAAGCAAAAAGAGCTTGTCAAATTGACATTGGCAAGAAGATTTCATGGCAAGCCCTTAGT
TGTTCCAAAGTATCAAAGATTATTCTCCCTTTTAGAGGCTATCAATCGCGGGAAATTGCCTAGAAGGTTCATCACCCTAG
TCAAAAAACAAAGGGCAACTGGCTATCCTCTCTTAATCTTTTTTCCGCTTATTGAGCTGGCTGAGCAATGCTGTCAGCTG
CTCCAAAAGTATTTTCCTAAGGAAACTATTGCCCATGCTTCTAGTCAGTCATCAAATCGAATGACTATCATTGAGCAATT
CAGACAAGGACAAATCACTATACTTATATCAACAACCATTTTGGAAAGAGGTGTGACCTTTCCGACCGTAGATGTCTTTG
TCTTATTAGCCAATCATCGCCTTTACACAAGCAGCAGTCTTATTCAAATTTCAGGTCGCGTTGGGCGCTCTTTGGAAAGA
CCGGAAGGACAGGTGCTATTTTTTCATGATGGTATTAGCCAGGCTATGCTCAAGGCAGTGCGGGAGATAAAGGACATGAA
TCAAAAAGGGTATCAAAATGAACTGTCTACTCTGCCACAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(288-396)

DEAD/DEAH box helicase (DEAD)

(101-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae R6

52.706

96.591

0.509
  comFA/cflA Streptococcus pneumoniae Rx1

52.706

96.591

0.509
  comFA/cflA Streptococcus pneumoniae D39

52.706

96.591

0.509
  comFA/cflA Streptococcus pneumoniae TIGR4

52.706

96.591

0.509
  comFA/cflA Streptococcus mitis SK321

52.706

96.591

0.509
  comFA/cflA Streptococcus mitis NCTC 12261

52.471

96.591

0.507
  comFA Lactococcus lactis subsp. cremoris KW2

48.469

89.091

0.432

Multiple sequence alignment