Detailed information NTG1136746

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: DQL47_RS05810
• Genome accession: NZ_LS483328
• Coordinates: 1202594..1203823 (-)
• Length: 409 a.a.
• NCBI ID: WP_038674257.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain NCTC12090
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1197594..1208823

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL47_RS05795 (NCTC12090_01162)	hupY	1198610..1201612 (-)	3003	WP_111690154.1	leucine-rich repeat adhesin HupY/LrrG	-
DQL47_RS05805 (NCTC12090_01164)	yihA	1201985..1202584 (-)	600	WP_012677890.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
DQL47_RS05810 (NCTC12090_01165)	clpX	1202594..1203823 (-)	1230	WP_038674257.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
DQL47_RS05815 (NCTC12090_01166)	-	1203859..1204029 (-)	171	WP_012515696.1	hypothetical protein	-
DQL47_RS05820 (NCTC12090_01167)	-	1204049..1204546 (-)	498	WP_038674254.1	dihydrofolate reductase	-
DQL47_RS05825 (NCTC12090_01168)	-	1204627..1205466 (-)	840	WP_014622940.1	thymidylate synthase	-
DQL47_RS05830 (NCTC12090_01169)	-	1205651..1206829 (+)	1179	WP_014622941.1	hydroxymethylglutaryl-CoA synthase	-
DQL47_RS05835 (NCTC12090_01170)	-	1206816..1208099 (+)	1284	WP_172454102.1	hydroxymethylglutaryl-CoA reductase, degradative	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45114.60 Da
• Isoelectric Point: 4.6016

>NTDB_id=1136746 DQL47_RS05810 WP_038674257.1 1202594..1203823(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEINAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFAKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVTKVRITKEAVEG
QSKPVLEIA

Nucleotide

• Length: 1230 bp

>NTDB_id=1136746 DQL47_RS05810 WP_038674257.1 1202594..1203823(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGTAATAACGTCTTTATTTGTAACGAATGTGTTGCCTTATCACAAGAAATCATCAAGGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAAGTACCAAAGCCAAAAGAGCTGCTTGAGATTTTAAATCAATACGTCATTGGGCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTACAACCACTACAAGAGGATTTCATTTACTGAGAGTCGTGACGATGATGATGT
GGATTTGCAAAAGTCAAACATTCTGATGATTGGACCAACAGGCTCAGGAAAGACCTTTTTGGCACAGACCCTAGCTAAGA
GTCTGAATGTTCCGTTTGCTATTGCTGATGCAACCTCTTTGACTGAGGCAGGCTATGTCGGAGAAGATGTGGAAAATATC
CTCCTGAAATTAATTCAAGCAGCTGATTACAATGTTGAGCGTGCAGAGCGCGGCATTATTTATGTTGACGAAATTGATAA
AATCGCTAAAAAAGGTGAGAATGTCTCCATTACTCGTGATGTATCAGGAGAAGGTGTCCAACAAGCCTTGCTAAAAATTA
TTGAGGGAACGGTTGCTAGTGTTCCACCACAGGGTGGTCGTAAGCACCCAAACCAAGAGATGATACAGATTGATACCAAA
AATATCTTGTTTATCGTCGGAGGCGCTTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGAGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCTTCCTATATGCAGGAGATCAATGCTGAGGATATTCAAAAATTTG
GTCTGATTCCTGAATTTATTGGACGCTTGCCTGTTGTGGCAGCGCTTGAGCAGCTTAATACTGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCCCTTGTGAAGCAATATCAAGCCTTGCTGTCATATGATGGCGTAGAGCTTGAGTTTGCAAA
GGGAGCTCTGGAAGCTATTGCAGGCAGAGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATCGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAACCAAGGTACGCATTACTAAGGAAGCTGTCGAGGGT
CAATCAAAGCCCGTTTTAGAGATAGCCTAG

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.509	100	0.885
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.853	98.044	0.577