Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   DQL79_RS00520 Genome accession   NZ_LS483324
Coordinates   94091..95440 (-) Length   449 a.a.
NCBI ID   WP_001836585.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC10344     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 89091..100440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL79_RS00485 (NCTC10344_00091) - 89846..90256 (-) 411 WP_001836564.1 DUF2871 domain-containing protein -
  DQL79_RS00490 (NCTC10344_00092) - 90419..90640 (-) 222 WP_001836575.1 hypothetical protein -
  DQL79_RS00495 (NCTC10344_00093) - 90654..91157 (-) 504 WP_002494302.1 DUF1643 domain-containing protein -
  DQL79_RS00500 (NCTC10344_00094) - 91172..91483 (-) 312 WP_001836584.1 DUF960 family protein -
  DQL79_RS00510 (NCTC10344_00096) - 91570..91920 (-) 351 WP_001836581.1 SAUGI family uracil-DNA glycosylase inhibitor -
  DQL79_RS00515 (NCTC10344_00097) ccrB 92441..94069 (-) 1629 WP_001836582.1 cassette chromosome recombinase CcrB Machinery gene
  DQL79_RS00520 (NCTC10344_00098) ccrA 94091..95440 (-) 1350 WP_001836585.1 cassette chromosome recombinase CcrA Machinery gene
  DQL79_RS00525 (NCTC10344_00099) cch1 95674..97467 (-) 1794 WP_001836568.1 cassette chromosome replicative helicase -
  DQL79_RS00530 (NCTC10344_00100) ssb 97467..97760 (-) 294 WP_001836558.1 cassette chromosome ssDNA-binding protein -
  DQL79_RS00535 - 97994..99135 (+) 1142 WP_100228308.1 IS3 family transposase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52668.24 Da        Isoelectric Point: 10.0062

>NTDB_id=1136506 DQL79_RS00520 WP_001836585.1 94091..95440(-) (ccrA) [Staphylococcus aureus strain NCTC10344]
MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQLIQQGQCDILCCYRLNRLHRN
LKNALKLIKLCQTYRVHILSVHDGYFDMDQAFDRFKLNIFISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYH
NGTFIINQNESPTVKGVFNYYLKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
YEQAQRLRSQKQTKQTPSDNQLKQKIKCPCCNATLTNMTVRKKNHTLRYYVCPKNMNASRFVCDFKGINAQTLEDKVLEV
CRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLIEKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQ
NIIQKRFTLNILYPYIETIHITKDKNLIGIYFKNEPLNIVNQTMQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1136506 DQL79_RS00520 WP_001836585.1 94091..95440(-) (ccrA) [Staphylococcus aureus strain NCTC10344]
ATGAAACAAGTCATAGGCTATTTACGTCAAAGTACGATGAAACAACAATCTCTTGCAGCACAGAAACAAGCTATCGAAGC
AATAGCCGAAAAACATCATATTCAACATATCAACTTTTATAGCGACAAACAATCAGGACGCAAAGATAATCGTAGTGGGT
ATCGACAAATGACACAATTAATTCAACAAGGACAATGTGACATATTATGCTGTTATCGTCTTAATAGGTTGCATCGTAAT
TTGAAAAATGCATTAAAACTCATCAAATTATGTCAAACATATCGTGTTCATATCTTAAGTGTGCATGATGGTTATTTTGA
TATGGATCAAGCTTTCGACCGATTCAAGCTTAATATTTTTATCAGCTTGGCCGAACTTGAATCAGATAACATTGGAGAAC
AAGTCAGAAATGGGCTTCAAGAAAAAGCAAAGCAAGGTCGATTGATTACAACCCATGCGCCCTTTGGTTACGAATATCAC
AACGGAACATTCATCATCAATCAAAATGAGTCACCAACGGTAAAGGGTGTATTCAATTATTACCTTAAAGGTCATGGTTA
TAAGAAAATTGCACAGTTATTAGAAGAAGATAACACGTATATCAATCGACAACCCTATCAAGTTCGTAACATTATCATCA
ATCCTAATTATTGTGGTCGTGTCAATAATCAATATGGCCAATTCGACAATATGTTTCCTTCTATTGTTTCCACAAGTATA
TATGAGCAAGCGCAGAGACTTCGATCGCAAAAACAAACCAAACAGACACCTTCGGATAACCAACTAAAACAAAAAATCAA
ATGCCCATGTTGTAATGCAACACTTACGAATATGACCGTTAGAAAAAAGAATCATACATTACGTTACTACGTCTGTCCTA
AAAACATGAATGCTTCACGCTTTGTCTGTGATTTTAAAGGCATCAATGCACAAACACTTGAAGATAAAGTATTAGAAGTG
TGCCGAGACTTTTATCAAAATCAACGCATCTACACAAAAATTAAAAGTGCGATTGACAAACGCATCAAAAGACAAAGAAA
CATAGAAAAACATCACACATTGACTCAAGAACAACTGATAGAAAAGTTGGCACAAGGCATCATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACGTCAACAACCGCAACGCACTACATCTATCAATGGGCATCAAATACAACACACCATTCAA
AATATTATTCAAAAACGTTTCACGTTAAACATATTGTACCCCTATATTGAAACCATTCACATTACGAAAGATAAAAATCT
TATAGGAATCTATTTCAAAAATGAACCACTCAATATCGTCAATCAAACCATGCAATCATCAATTGCATAA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus N315

97.996

100

0.98
  ccrA Staphylococcus aureus COL

75.056

100

0.751

Multiple sequence alignment