Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   DQL79_RS00515 Genome accession   NZ_LS483324
Coordinates   92441..94069 (-) Length   542 a.a.
NCBI ID   WP_001836582.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC10344     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 87441..99069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL79_RS15035 - 87597..87686 (-) 90 Protein_86 replication initiation protein -
  DQL79_RS00470 (NCTC10344_00089) - 87742..88416 (+) 675 WP_001105999.1 IS6-like element IS257 family transposase -
  DQL79_RS00475 (NCTC10344_00090) - 88681..89178 (-) 498 WP_000776433.1 GNAT family N-acetyltransferase -
  DQL79_RS00485 (NCTC10344_00091) - 89846..90256 (-) 411 WP_001836564.1 DUF2871 domain-containing protein -
  DQL79_RS00490 (NCTC10344_00092) - 90419..90640 (-) 222 WP_001836575.1 hypothetical protein -
  DQL79_RS00495 (NCTC10344_00093) - 90654..91157 (-) 504 WP_002494302.1 DUF1643 domain-containing protein -
  DQL79_RS00500 (NCTC10344_00094) - 91172..91483 (-) 312 WP_001836584.1 DUF960 family protein -
  DQL79_RS00510 (NCTC10344_00096) - 91570..91920 (-) 351 WP_001836581.1 SAUGI family uracil-DNA glycosylase inhibitor -
  DQL79_RS00515 (NCTC10344_00097) ccrB 92441..94069 (-) 1629 WP_001836582.1 cassette chromosome recombinase CcrB Machinery gene
  DQL79_RS00520 (NCTC10344_00098) ccrA 94091..95440 (-) 1350 WP_001836585.1 cassette chromosome recombinase CcrA Machinery gene
  DQL79_RS00525 (NCTC10344_00099) cch1 95674..97467 (-) 1794 WP_001836568.1 cassette chromosome replicative helicase -
  DQL79_RS00530 (NCTC10344_00100) ssb 97467..97760 (-) 294 WP_001836558.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62622.75 Da        Isoelectric Point: 9.9149

>NTDB_id=1136505 DQL79_RS00515 WP_001836582.1 92441..94069(-) (ccrB) [Staphylococcus aureus strain NCTC10344]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKEGNIDCVM
IYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVARVNQENKVDGAALHHDIAYKQQQYD
EVQTKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKSLFDAKQISKLLQHIFQDIKHMEKSRLK
ALYLSVIDRINIRKDDNHKKQFYVTLKLNNEVIKQVFNDTPLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=1136505 DQL79_RS00515 WP_001836582.1 92441..94069(-) (ccrB) [Staphylococcus aureus strain NCTC10344]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTTTCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGATGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAGGTCAAAGATATATACGCTGATCGTGGTA
TTTCAGGTAAATCTATGAACAGACCTGAGCTCCAACGTATGTTGAAAGATGCAAAAGAAGGCAATATAGATTGTGTTATG
ATCTACAAAACAAACCGATTAGCTCGTAATACATCGGATCTTCTGAAAATCGTCGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTTTATCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACATGAAGCTAATATTGTGAAATA
TATATTCGAGTCCTATGCCAAAGGACATGGCTATCGTAAAATAGCCAATGCATTAAATCACAAAGGCTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGA
ATCTGCTTACAGGCATTATTCACTGTCCTCAATGTGGCGCACCTATGGCAGCAAGCAATACAACGAATACACTTAAAGAT
GGGACCAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGCTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTCGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTTG
TAGCACGTGTTAATCAAGAAAATAAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAACCAAACTAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGTCTT
TATTTGATGCCAAACAAATCAGTAAACTATTACAACACATCTTTCAAGATATTAAGCACATGGAAAAATCTCGACTCAAA
GCATTGTACCTATCAGTGATTGATCGTATTAATATTAGAAAAGATGACAATCATAAAAAACAGTTCTATGTCACACTCAA
ACTTAATAATGAAGTAATTAAACAGGTTTTCAATGATACTCCTCTCGACGAAGTGCATCTCAGCACTTCGTCTTTATTTT
TACCACAAACCCTATATCTTACTATTTAA

Domains

Predicted by InterProScan.

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

96.494

100

0.965

Multiple sequence alignment