Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQL75_RS11100 Genome accession   NZ_LS483317
Coordinates   2164053..2164448 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC5663     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2159053..2169448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL75_RS11075 (NCTC5663_02089) thiE 2159652..2160293 (-) 642 WP_111762527.1 thiamine phosphate synthase -
  DQL75_RS11080 (NCTC5663_02090) thiM 2160295..2161086 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  DQL75_RS11085 (NCTC5663_02091) thiD 2161070..2161900 (-) 831 WP_111762528.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DQL75_RS11090 (NCTC5663_02092) tenA 2161893..2162582 (-) 690 WP_111762529.1 thiaminase II -
  DQL75_RS11095 (NCTC5663_02094) sceD 2162969..2163664 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  DQL75_RS11100 (NCTC5663_02095) ssb 2164053..2164448 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DQL75_RS11105 (NCTC5663_02096) - 2164642..2165082 (+) 441 WP_000846746.1 YwpF-like family protein -
  DQL75_RS11110 (NCTC5663_02097) fabZ 2165140..2165580 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DQL75_RS11115 (NCTC5663_02098) murA 2165614..2166879 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQL75_RS11120 (NCTC5663_02099) - 2166990..2167223 (-) 234 WP_000384523.1 DUF1146 family protein -
  DQL75_RS11125 - 2167355..2167447 (-) 93 WP_111762824.1 hypothetical protein -
  DQL75_RS11135 (NCTC5663_02100) - 2167818..2168222 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1136171 DQL75_RS11100 WP_000932694.1 2164053..2164448(-) (ssb) [Staphylococcus aureus strain NCTC5663]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1136171 DQL75_RS11100 WP_000932694.1 2164053..2164448(-) (ssb) [Staphylococcus aureus strain NCTC5663]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCCAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment