Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DQL75_RS08435 Genome accession   NZ_LS483317
Coordinates   1670661..1671347 (-) Length   228 a.a.
NCBI ID   WP_111762346.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC5663     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1665661..1676347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL75_RS08415 (NCTC5663_01599) rpsT 1666575..1666826 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  DQL75_RS08420 (NCTC5663_01600) holA 1666871..1667845 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DQL75_RS08425 (NCTC5663_01601) comEC 1667902..1670103 (-) 2202 WP_172452300.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQL75_RS08430 (NCTC5663_01602) - 1670108..1670569 (-) 462 WP_000439693.1 ComE operon protein 2 -
  DQL75_RS08435 (NCTC5663_01603) comEA 1670661..1671347 (-) 687 WP_111762346.1 ComEA family DNA-binding protein Machinery gene
  DQL75_RS08440 (NCTC5663_01604) - 1671387..1672103 (-) 717 WP_111762347.1 class I SAM-dependent DNA methyltransferase -
  DQL75_RS08445 (NCTC5663_01605) rsfS 1672106..1672459 (-) 354 WP_001088020.1 ribosome silencing factor -
  DQL75_RS08450 (NCTC5663_01606) yqeK 1672460..1673044 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DQL75_RS08455 (NCTC5663_01607) nadD 1673034..1673603 (-) 570 WP_111762348.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DQL75_RS08460 (NCTC5663_01608) yhbY 1673606..1673896 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  DQL75_RS08465 (NCTC5663_01609) aroE 1673900..1674706 (-) 807 WP_111762349.1 shikimate dehydrogenase -
  DQL75_RS08470 (NCTC5663_01610) yqeH 1674720..1675820 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25727.43 Da        Isoelectric Point: 9.6753

>NTDB_id=1136160 DQL75_RS08435 WP_111762346.1 1670661..1671347(-) (comEA) [Staphylococcus aureus strain NCTC5663]
MVLLYQILLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1136160 DQL75_RS08435 WP_111762346.1 1670661..1671347(-) (comEA) [Staphylococcus aureus strain NCTC5663]
GTGGTTTTATTGTATCAAATTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

98.238

99.561

0.978

Multiple sequence alignment