Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DQL75_RS06620 Genome accession   NZ_LS483317
Coordinates   1284102..1284974 (+) Length   290 a.a.
NCBI ID   WP_111762222.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC5663     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1279102..1289974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL75_RS06600 (NCTC5663_01254) ylqF 1279938..1280822 (+) 885 WP_000236718.1 ribosome biogenesis GTPase YlqF -
  DQL75_RS06605 (NCTC5663_01255) - 1280806..1281573 (+) 768 WP_111762221.1 ribonuclease HII -
  DQL75_RS06610 (NCTC5663_01256) sucC 1281682..1282848 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  DQL75_RS06615 (NCTC5663_01257) sucD 1282870..1283778 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  DQL75_RS06620 (NCTC5663_01258) dprA 1284102..1284974 (+) 873 WP_111762222.1 DNA-processing protein DprA Machinery gene
  DQL75_RS06625 (NCTC5663_01259) topA 1285148..1287223 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  DQL75_RS06630 (NCTC5663_01260) trmFO 1287379..1288686 (+) 1308 WP_111762223.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33224.44 Da        Isoelectric Point: 8.3110

>NTDB_id=1136147 DQL75_RS06620 WP_111762222.1 1284102..1284974(+) (dprA) [Staphylococcus aureus strain NCTC5663]
MLNHILLKLIWSRFTTAQIHLLLKTYPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINHLSYPHTLAVVGSRLSGDYTLKALNHLFASFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1136147 DQL75_RS06620 WP_111762222.1 1284102..1284974(+) (dprA) [Staphylococcus aureus strain NCTC5663]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTATCC
AAGTTGTTGTGAAGTAGACGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCACCTTAGTTATCCGCACACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGCTTCATTTCAACAAATGAGTTTCTGTGTTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.677

100

0.686
  dprA Staphylococcus aureus N315

66.897

100

0.669
  dprA Vibrio campbellii strain DS40M4

39.114

93.448

0.366

Multiple sequence alignment