Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DQL75_RS02970 Genome accession   NZ_LS483317
Coordinates   584929..585498 (+) Length   189 a.a.
NCBI ID   WP_111761962.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC5663     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 579929..590498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL75_RS02945 (NCTC5663_00555) cysE 581142..581789 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  DQL75_RS02950 (NCTC5663_00556) cysS 581773..583173 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  DQL75_RS02955 (NCTC5663_00557) - 583166..583570 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  DQL75_RS02960 (NCTC5663_00558) rlmB 583578..584324 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DQL75_RS02965 (NCTC5663_00559) - 584324..584848 (+) 525 WP_000664738.1 NYN domain-containing protein -
  DQL75_RS02970 (NCTC5663_00560) sigH 584929..585498 (+) 570 WP_111761962.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL75_RS02975 rpmG 585613..585756 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  DQL75_RS02980 (NCTC5663_00561) secE 585812..585994 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  DQL75_RS02985 (NCTC5663_00562) nusG 586007..586555 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DQL75_RS02990 (NCTC5663_00563) rplK 586736..587158 (+) 423 WP_111761963.1 50S ribosomal protein L11 -
  DQL75_RS02995 (NCTC5663_00564) rplA 587366..588058 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  DQL75_RS03005 (NCTC5663_00566) rplJ 588330..588830 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  DQL75_RS03010 (NCTC5663_00567) rplL 588873..589241 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DQL75_RS03015 (NCTC5663_00568) - 589416..590024 (+) 609 WP_111761964.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23067.93 Da        Isoelectric Point: 9.6015

>NTDB_id=1136139 DQL75_RS02970 WP_111761962.1 584929..585498(+) (sigH) [Staphylococcus aureus strain NCTC5663]
MKYDLTTQDGTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1136139 DQL75_RS02970 WP_111761962.1 584929..585498(+) (sigH) [Staphylococcus aureus strain NCTC5663]
TTGAAATACGATTTGACAACTCAAGACGGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAGGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment