Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQL90_RS11010 Genome accession   NZ_LS483314
Coordinates   2130802..2131197 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC3761     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2125802..2136197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL90_RS10980 (NCTC3761_02072) thiE 2126263..2126904 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  DQL90_RS10985 (NCTC3761_02073) thiM 2126906..2127697 (-) 792 WP_111688673.1 hydroxyethylthiazole kinase -
  DQL90_RS10990 (NCTC3761_02074) thiD 2127681..2128511 (-) 831 WP_000594942.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DQL90_RS10995 (NCTC3761_02075) tenA 2128504..2129193 (-) 690 WP_000396074.1 thiaminase II -
  DQL90_RS11005 (NCTC3761_02078) sceD 2129718..2130413 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  DQL90_RS11010 (NCTC3761_02079) ssb 2130802..2131197 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  DQL90_RS11015 (NCTC3761_02080) - 2131391..2131831 (+) 441 WP_000846746.1 YwpF-like family protein -
  DQL90_RS11020 (NCTC3761_02081) fabZ 2131890..2132330 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DQL90_RS11025 (NCTC3761_02083) murA 2132364..2133628 (-) 1265 Protein_2049 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQL90_RS11030 (NCTC3761_02084) - 2133739..2133972 (-) 234 WP_000384523.1 DUF1146 family protein -
  DQL90_RS11035 - 2134104..2134196 (-) 93 WP_001790611.1 hypothetical protein -
  DQL90_RS11040 (NCTC3761_02085) - 2134534..2134938 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1136032 DQL90_RS11010 WP_000932694.1 2130802..2131197(-) (ssb) [Staphylococcus aureus strain NCTC3761]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1136032 DQL90_RS11010 WP_000932694.1 2130802..2131197(-) (ssb) [Staphylococcus aureus strain NCTC3761]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment