Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   DQL90_RS08095 Genome accession   NZ_LS483314
Coordinates   1606737..1607234 (-) Length   165 a.a.
NCBI ID   WP_029694050.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC3761     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1601737..1612234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL90_RS08070 (NCTC3761_01534) gcvPB 1601899..1603371 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  DQL90_RS08075 (NCTC3761_01535) gcvPA 1603364..1604710 (-) 1347 WP_042727693.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  DQL90_RS08080 (NCTC3761_01536) gcvT 1604730..1605821 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  DQL90_RS08085 - 1605980..1606504 (-) 525 WP_001015121.1 shikimate kinase -
  DQL90_RS08090 - 1606494..1606640 (-) 147 WP_001789879.1 hypothetical protein -
  DQL90_RS08095 (NCTC3761_01538) comGF 1606737..1607234 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL90_RS08100 (NCTC3761_01539) comGE 1607152..1607451 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  DQL90_RS08105 (NCTC3761_01540) comGD 1607438..1607884 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQL90_RS08110 (NCTC3761_01541) comGC 1607862..1608173 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL90_RS08115 (NCTC3761_01542) comGB 1608187..1609257 (-) 1071 WP_000776421.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL90_RS08120 (NCTC3761_01543) comGA 1609229..1610203 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL90_RS08125 (NCTC3761_01544) - 1610255..1610878 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  DQL90_RS08130 (NCTC3761_01545) - 1610875..1611204 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  DQL90_RS08135 (NCTC3761_01546) - 1611204..1612190 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19199.92 Da        Isoelectric Point: 10.2192

>NTDB_id=1136013 DQL90_RS08095 WP_029694050.1 1606737..1607234(-) (comGF) [Staphylococcus aureus strain NCTC3761]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1136013 DQL90_RS08095 WP_029694050.1 1606737..1607234(-) (comGF) [Staphylococcus aureus strain NCTC3761]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

96.97

100

0.97
  comGF Staphylococcus aureus N315

96.97

100

0.97

Multiple sequence alignment