Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   DQL90_RS05085 Genome accession   NZ_LS483314
Coordinates   988387..989373 (+) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC3761     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 983387..994373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL90_RS05060 (NCTC3761_00962) opp4B 983600..984562 (+) 963 WP_111688612.1 oligopeptide ABC transporter permease -
  DQL90_RS05065 (NCTC3761_00963) opp4C 984574..985455 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  DQL90_RS05070 (NCTC3761_00964) trpS 985497..986486 (-) 990 WP_000448943.1 tryptophan--tRNA ligase -
  DQL90_RS05075 (NCTC3761_00965) spxA 986781..987176 (+) 396 WP_111688614.1 transcriptional regulator SpxA -
  DQL90_RS05080 (NCTC3761_00966) mecA 987547..988266 (+) 720 WP_001217728.1 adaptor protein MecA -
  DQL90_RS05085 (NCTC3761_00967) coiA 988387..989373 (+) 987 WP_000959292.1 competence protein CoiA Machinery gene
  DQL90_RS05090 (NCTC3761_00968) pepF 989421..991229 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  DQL90_RS14610 - 991396..991500 (-) 105 WP_398570768.1 hypothetical protein -
  DQL90_RS05095 (NCTC3761_00970) - 991519..992838 (-) 1320 WP_001808146.1 ISL3-like element IS1181 family transposase -
  DQL90_RS05100 (NCTC3761_00972) yjbH 993210..994016 (-) 807 Protein_961 protease adaptor protein YjbH -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=1136007 DQL90_RS05085 WP_000959292.1 988387..989373(+) (coiA) [Staphylococcus aureus strain NCTC3761]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1136007 DQL90_RS05085 WP_000959292.1 988387..989373(+) (coiA) [Staphylococcus aureus strain NCTC3761]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment