Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DQL63_RS08035 Genome accession   NZ_LS483312
Coordinates   1672184..1673056 (-) Length   290 a.a.
NCBI ID   WP_037542972.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain NCTC7990     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1667184..1678056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL63_RS08020 (NCTC7990_01629) xerC 1667559..1668452 (-) 894 WP_002459293.1 tyrosine recombinase XerC -
  DQL63_RS08025 (NCTC7990_01630) trmFO 1668584..1669891 (-) 1308 WP_002459294.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DQL63_RS08030 (NCTC7990_01631) topA 1669943..1672018 (-) 2076 WP_172412355.1 type I DNA topoisomerase -
  DQL63_RS08035 (NCTC7990_01632) dprA 1672184..1673056 (-) 873 WP_037542972.1 DNA-processing protein DprA Machinery gene
  DQL63_RS08040 (NCTC7990_01633) - 1673715..1674950 (-) 1236 WP_060795291.1 aminoacyltransferase -
  DQL63_RS08045 (NCTC7990_01634) sucD 1675105..1676013 (-) 909 WP_002459298.1 succinate--CoA ligase subunit alpha -
  DQL63_RS08050 (NCTC7990_01635) sucC 1676035..1677201 (-) 1167 WP_002459299.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32991.80 Da        Isoelectric Point: 7.5906

>NTDB_id=1135955 DQL63_RS08035 WP_037542972.1 1672184..1673056(-) (dprA) [Staphylococcus lugdunensis strain NCTC7990]
MDDIVLLKLRYSGIQAPQFQRLIHAYPNFLSLSEDDLLNLLSKTEIKKWFGDIAAQYKRISEDYILTSLYDASVKFITIN
SQCYSTLLKEIYDFPPILFYRGDISLLNSNTTLAVVGSRKATSYSYKALDFLFSEFNRRFTIVSGLAKGADSMAHELAIQ
HHHATIAVLGFGHLTHYPKETYILRQKIEAHHLSISEYLPFEPVTKYHFPQRNRLISGISKGVLITEAEKRSGSQITIAH
ALDQNRNVYVLPGDLFNPLTQGNLYRAREGACIVTGAEDILMDYDINKVF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1135955 DQL63_RS08035 WP_037542972.1 1672184..1673056(-) (dprA) [Staphylococcus lugdunensis strain NCTC7990]
GTGGACGATATTGTTTTATTAAAATTACGTTATAGTGGTATACAAGCGCCTCAATTTCAACGGCTTATACATGCGTACCC
TAACTTTTTATCACTTTCAGAGGATGATTTACTTAATTTATTATCGAAGACAGAAATTAAAAAATGGTTCGGAGACATAG
CTGCACAATACAAACGGATTTCTGAAGATTATATTTTAACATCATTATACGATGCCTCTGTCAAATTTATCACTATCAAT
AGCCAATGTTATTCTACCTTATTAAAAGAAATTTATGATTTTCCACCAATCCTATTTTATCGTGGTGATATTTCACTCCT
TAATTCAAACACTACATTAGCCGTTGTCGGTTCTCGTAAAGCCACAAGTTATTCCTACAAAGCTTTAGACTTTTTATTTA
GCGAATTTAATCGTCGTTTCACGATTGTTTCAGGTTTAGCCAAAGGAGCCGATAGCATGGCACACGAATTAGCTATACAA
CACCATCATGCGACAATCGCAGTGCTTGGATTTGGACATCTCACACATTATCCTAAAGAAACATATATTTTACGTCAAAA
AATTGAAGCACATCACTTATCAATCAGTGAATATTTACCTTTCGAACCAGTAACGAAATATCATTTTCCACAACGAAATC
GCTTAATAAGCGGTATTTCTAAAGGTGTACTGATTACCGAAGCTGAAAAACGTAGTGGTAGTCAGATTACAATCGCACAT
GCACTTGACCAAAATAGAAATGTTTATGTTCTTCCAGGAGATCTATTTAATCCACTTACACAAGGTAATTTATACCGTGC
ACGAGAAGGAGCGTGTATTGTCACTGGAGCTGAAGATATTTTAATGGATTATGATATTAATAAAGTTTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

48.475

100

0.493
  dprA Staphylococcus aureus MW2

48.475

100

0.493

Multiple sequence alignment