Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   DQL63_RS01640 Genome accession   NZ_LS483312
Coordinates   354520..355185 (+) Length   221 a.a.
NCBI ID   WP_002460617.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain NCTC7990     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 349520..360185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL63_RS01620 (NCTC7990_00321) - 349894..351165 (+) 1272 WP_002478509.1 nucleotide sugar dehydrogenase -
  DQL63_RS01625 (NCTC7990_00322) wecB 351208..352347 (+) 1140 WP_002460620.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  DQL63_RS01630 (NCTC7990_00323) - 352533..353981 (-) 1449 WP_002460619.1 alkaline phosphatase -
  DQL63_RS12420 - 354200..354307 (+) 108 Protein_320 hypothetical protein -
  DQL63_RS01640 (NCTC7990_00325) braR 354520..355185 (+) 666 WP_002460617.1 response regulator transcription factor Regulator
  DQL63_RS01645 (NCTC7990_00326) braS 355191..356099 (+) 909 WP_002460615.1 sensor histidine kinase Regulator
  DQL63_RS01650 (NCTC7990_00327) - 356205..356954 (+) 750 WP_002478514.1 ABC transporter ATP-binding protein -
  DQL63_RS01655 (NCTC7990_00328) - 356947..358938 (+) 1992 WP_231912833.1 FtsX-like permease family protein -
  DQL63_RS01660 (NCTC7990_00329) - 358980..359429 (+) 450 WP_002460612.1 membrane protein -
  DQL63_RS01665 (NCTC7990_00330) - 359516..359995 (+) 480 WP_002460610.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25798.73 Da        Isoelectric Point: 4.6843

>NTDB_id=1135933 DQL63_RS01640 WP_002460617.1 354520..355185(+) (braR) [Staphylococcus lugdunensis strain NCTC7990]
MRIMIVEDDVVIRESLAGELMKWNYDVVAVDTFDDIVSWFVKYEPDLVLLDINLPTLNGFHWCQEIRKSSNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTITKIQALLRRTYDLTVNHNETTVRDCKLIIDEATLYYKEESVHLSFTELQIIK
MLFDNQGKYVSRTALIEKCWESEHFIDDNTLAVNMTRLRKKLNSIGLEDFIETKKNIGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1135933 DQL63_RS01640 WP_002460617.1 354520..355185(+) (braR) [Staphylococcus lugdunensis strain NCTC7990]
ATGAGGATTATGATTGTTGAGGATGATGTTGTGATTCGCGAGAGTTTGGCTGGTGAACTGATGAAGTGGAATTATGATGT
GGTTGCTGTAGATACCTTTGATGATATTGTGTCTTGGTTCGTAAAGTATGAACCAGATTTAGTGTTGTTGGACATTAATT
TACCTACATTGAATGGATTTCACTGGTGCCAAGAAATTCGCAAATCGTCAAATGTACCAATTATTTTTATTAGCTCACGC
ACGGATAATATGGATCAGATTATGGCGATACAAATGGGTGGAGATGACTTTATAGAAAAACCATTTAATCTGTCATTGAC
CATAACAAAGATTCAAGCTTTGCTTCGTCGAACTTATGATTTAACTGTGAATCATAATGAAACGACAGTTCGTGACTGTA
AGTTGATTATTGATGAAGCAACGCTTTATTACAAAGAAGAATCGGTACATTTATCATTTACAGAGTTACAAATTATTAAA
ATGCTGTTTGATAATCAAGGTAAATATGTCAGTCGCACAGCGTTAATTGAAAAATGCTGGGAGTCTGAACACTTTATTGA
TGACAATACGCTTGCGGTAAATATGACACGCTTACGCAAAAAACTTAATTCTATAGGGCTTGAAGATTTTATTGAAACAA
AAAAGAATATAGGATATAAGGTTTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

76.923

100

0.769

Multiple sequence alignment