Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O987_RS04065 Genome accession   NZ_CP006704
Coordinates   902088..903305 (-) Length   405 a.a.
NCBI ID   WP_043370923.1    Uniprot ID   -
Organism   Comamonas testosteroni TK102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 897088..908305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O987_RS04035 (O987_04080) - 897898..898833 (+) 936 WP_003058555.1 ATP-binding protein -
  O987_RS04040 (O987_04085) - 898846..899319 (+) 474 WP_200879588.1 NUDIX domain-containing protein -
  O987_RS04045 (O987_04090) - 899435..899647 (-) 213 WP_003058551.1 DNA gyrase inhibitor YacG -
  O987_RS04050 (O987_04095) zapD 899746..900501 (-) 756 WP_043370920.1 cell division protein ZapD -
  O987_RS04055 (O987_04100) coaE 900589..901215 (-) 627 WP_003058547.1 dephospho-CoA kinase -
  O987_RS04060 (O987_04105) - 901219..902088 (-) 870 WP_043370921.1 prepilin peptidase -
  O987_RS04065 (O987_04110) pilC 902088..903305 (-) 1218 WP_043370923.1 type II secretion system F family protein Machinery gene
  O987_RS04070 (O987_04115) pilB 903329..905071 (-) 1743 WP_043370924.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O987_RS04080 (O987_04125) - 905326..906255 (-) 930 WP_003058538.1 polyprenyl synthetase family protein -
  O987_RS04085 (O987_04130) rplU 906598..906909 (+) 312 WP_003058536.1 50S ribosomal protein L21 -
  O987_RS04090 (O987_04135) rpmA 906926..907183 (+) 258 WP_003058534.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44621.39 Da        Isoelectric Point: 9.5880

>NTDB_id=113593 O987_RS04065 WP_043370923.1 902088..903305(-) (pilC) [Comamonas testosteroni TK102]
MASAASKGIKEYLFEWEGKDRNGKIMRGETRAGGENQIQAMLRRQGVTPSKIKKRRTRGGKKIKPKDIALFTRQLATMMK
AGVPLLQSFDIVGRGNTNPNVTKLLNDIRSDVETGTSLSAAFRKFPLYFNSLYCNLVEAGEAAGILESLLDRLATYMEKT
EAIKSKIKSALMYPTSVMIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMGISEYFVQYWWLIFGVLGGGIYFFM
QAWKRNERVQQFMDRTMLKLPIFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNYLYRNATDRIQSEVSTGT
SLTVAMANANIFPSMVLQMCAIGEESGAIDHMLGKAADFYESEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=113593 O987_RS04065 WP_043370923.1 902088..903305(-) (pilC) [Comamonas testosteroni TK102]
ATGGCAAGCGCAGCGTCCAAGGGAATCAAGGAATATCTCTTCGAGTGGGAAGGCAAGGACCGCAACGGCAAGATCATGCG
CGGCGAAACGCGTGCCGGCGGGGAGAACCAGATCCAGGCCATGCTGCGCCGCCAGGGCGTGACTCCGTCCAAGATCAAGA
AGCGCAGGACCCGCGGCGGCAAGAAGATCAAGCCCAAGGACATTGCACTCTTCACGCGCCAACTGGCCACCATGATGAAG
GCCGGCGTGCCGCTGCTGCAGTCTTTCGACATCGTGGGCCGCGGCAATACCAACCCCAATGTCACCAAGCTGCTCAACGA
CATCCGCTCCGATGTGGAGACCGGTACCTCGCTGAGCGCTGCCTTTCGCAAGTTTCCGCTCTATTTCAACAGTCTCTACT
GCAACCTGGTGGAGGCCGGCGAGGCCGCAGGTATTCTGGAATCGCTGCTGGACCGTCTTGCCACCTATATGGAGAAGACG
GAAGCCATCAAGTCCAAGATCAAGTCCGCGCTGATGTACCCCACATCGGTGATGATCGTGGCCTTTGTCGTGGTGACCGT
GATCATGATTTTCGTGATTCCGGCCTTCAAGGAGGTCTTCACCTCCTTTGGCGCCGACCTGCCCGCACCCACGCTGCTGG
TGATGGGCATCAGTGAGTACTTTGTGCAGTACTGGTGGCTGATCTTCGGCGTGCTGGGCGGCGGCATCTATTTCTTCATG
CAGGCCTGGAAGCGCAACGAGCGCGTGCAGCAGTTCATGGACCGGACCATGCTCAAGCTGCCCATCTTCGGCGTGCTGAT
CGAGAAATCCTGCGTGGCCCGCTGGACGCGCACGCTATCCACCATGTTTGCAGCCGGCGTGCCGCTGGTCGAGGCGCTGG
ACTCCGTGGGAGGTGCCTCGGGCAACTATCTCTACAGAAACGCCACCGACAGGATTCAGTCGGAGGTCTCCACGGGCACC
AGCCTCACGGTTGCCATGGCCAATGCCAATATCTTCCCTTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCGGG
CGCCATCGACCATATGCTGGGCAAGGCCGCCGACTTCTATGAAAGCGAAGTGGACGAAATGGTGGCGGGTCTGTCCAGCC
TGATGGAGCCCATCATCATCGTCTTCCTGGGCACCTTGATCGGCGGCATCGTGGTGTCCATGTATCTGCCTATCTTCAAG
CTGGGTCAAGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

99.753

0.541
  pilC Legionella pneumophila strain ERS1305867

51.515

97.778

0.504
  pilG Neisseria gonorrhoeae MS11

51.385

98.025

0.504
  pilG Neisseria meningitidis 44/76-A

51.134

98.025

0.501
  pilC Acinetobacter baylyi ADP1

49.749

98.272

0.489
  pilC Acinetobacter baumannii D1279779

48.363

98.025

0.474
  pilC Vibrio cholerae strain A1552

40.05

98.025

0.393
  pilC Vibrio campbellii strain DS40M4

38.06

99.259

0.378
  pilC Thermus thermophilus HB27

36.139

99.753

0.36

Multiple sequence alignment