Detailed information NTG0113590

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: D934_RS12520
• Genome accession: NZ_CP006696
• Coordinates: 2702746..2704158 (-)
• Length: 470 a.a.
• NCBI ID: WP_020851242.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. sandyi Ann-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2697746..2709158

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D934_RS12495 (D934_13470)	-	2697869..2698315 (+)	447	WP_020851238.1	pilin	-
D934_RS12500 (D934_13475)	-	2698554..2698781 (-)	228	WP_020851239.1	hypothetical protein	-
D934_RS12510 (D934_13485)	-	2699620..2700072 (+)	453	WP_020851240.1	pilin	-
D934_RS12515 (D934_13490)	pilB	2700919..2702652 (+)	1734	WP_020851241.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D934_RS12520 (D934_13495)	pilR	2702746..2704158 (-)	1413	WP_020851242.1	sigma-54 dependent transcriptional regulator	Regulator
D934_RS12525 (D934_13500)	-	2704344..2705954 (-)	1611	WP_020851243.1	ATP-binding protein	-
D934_RS12530 (D934_13505)	sucC	2706209..2707372 (+)	1164	WP_004090371.1	ADP-forming succinate--CoA ligase subunit beta	-
D934_RS12535 (D934_13510)	sucD	2707401..2708273 (+)	873	WP_004090370.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 51287.19 Da
• Isoelectric Point: 7.4201

>NTDB_id=113590 D934_RS12520 WP_020851242.1 2702746..2704158(-) (pilR) [Xylella fastidiosa subsp. sandyi Ann-1]
MNESRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVKKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESSPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERAGDLL
HLAAAIVARLAHTHGRAVPLLSPSALEALEHYSFPGNVRELENILERALALTEDNHIGAADLHLPQGSLHGQGLPLPLVP
TALPIVPVDASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide

• Length: 1413 bp

>NTDB_id=113590 D934_RS12520 WP_020851242.1 2702746..2704158(-) (pilR) [Xylella fastidiosa subsp. sandyi Ann-1]
ATGAATGAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGATGGCAGTGGCATTGAGCTGGTGAAAAAGATTGTGCGTCATTATCCACGCACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAACGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGTGAATCATCACCGATGGCTCAGCTTCGGGCCACTATCGCTAAAGTGGCGCGT
AGTCAAGCCCCGGTTTATATCCTTGGTGAATCAGGAGTTGGTAAAGAACTGGTTGCACGTACGATCCACGAACAGAGTGT
GCGTGCTGCTGGGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAGCCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGCT
TCCGTCACGATTTGTACTACCGCATTAATGTAATCGAGATACGTGTTCCACCGCTACGTGAGCGTGCTGGCGATTTGCTG
CATCTTGCTGCAGCCATTGTGGCTCGCTTGGCACACACGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGAACATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATAATCATATCGGTGCTGCGGATCTGCACCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGCTCTCCCGATTGTGCCTGTGGACGCATCAGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTACAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCTGCAAAACTTG
GCATCACTTTCCGTGCATTGCGTTACAAACTAAAGAAGCTGGGCATGGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (427-467)

• Response regulator receiver domain (Response_reg) (8-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	57.996	99.787	0.579
pilR	Acinetobacter baumannii strain A118	47.579	100	0.481