Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DQL85_RS07995 Genome accession   NZ_LS483308
Coordinates   1607538..1608224 (-) Length   228 a.a.
NCBI ID   WP_078065998.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC13137     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1602538..1613224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL85_RS07975 (NCTC13137_01500) rpsT 1603452..1603703 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  DQL85_RS07980 (NCTC13137_01501) holA 1603748..1604722 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  DQL85_RS07985 (NCTC13137_01502) comEC 1604779..1606980 (-) 2202 WP_172449594.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQL85_RS07990 (NCTC13137_01503) - 1606985..1607446 (-) 462 WP_000439693.1 ComE operon protein 2 -
  DQL85_RS07995 (NCTC13137_01504) comEA 1607538..1608224 (-) 687 WP_078065998.1 ComEA family DNA-binding protein Machinery gene
  DQL85_RS08000 (NCTC13137_01505) - 1608264..1608980 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  DQL85_RS08005 (NCTC13137_01506) rsfS 1608983..1609336 (-) 354 WP_001088020.1 ribosome silencing factor -
  DQL85_RS08010 (NCTC13137_01507) yqeK 1609337..1609921 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DQL85_RS08015 (NCTC13137_01508) nadD 1609911..1610480 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DQL85_RS08020 (NCTC13137_01509) yhbY 1610483..1610773 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  DQL85_RS08025 (NCTC13137_01510) aroE 1610777..1611583 (-) 807 WP_111743851.1 shikimate dehydrogenase -
  DQL85_RS08030 (NCTC13137_01511) yqeH 1611597..1612697 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25812.62 Da        Isoelectric Point: 9.6403

>NTDB_id=1135830 DQL85_RS07995 WP_078065998.1 1607538..1608224(-) (comEA) [Staphylococcus aureus strain NCTC13137]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVYVKN
GITNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1135830 DQL85_RS07995 WP_078065998.1 1607538..1608224(-) (comEA) [Staphylococcus aureus strain NCTC13137]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGTATGTAAAAAAT
GGGATCACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.246

100

0.982
  comEA Staphylococcus aureus N315

97.368

100

0.974

Multiple sequence alignment