Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   DQL85_RS04790 Genome accession   NZ_LS483308
Coordinates   961300..961869 (-) Length   189 a.a.
NCBI ID   WP_111743811.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC13137     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 956300..966869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL85_RS04770 (NCTC13137_00895) - 957805..959163 (+) 1359 WP_000021865.1 TrkH family potassium uptake protein -
  DQL85_RS04775 (NCTC13137_00896) - 959302..960813 (+) 1512 WP_000414184.1 bifunctional metallophosphatase/5'-nucleotidase -
  DQL85_RS04790 (NCTC13137_00899) comK/comK1 961300..961869 (-) 570 WP_111743811.1 competence protein ComK Regulator
  DQL85_RS04795 (NCTC13137_00900) - 962079..962297 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  DQL85_RS04800 (NCTC13137_00901) - 962378..963364 (-) 987 WP_000668820.1 lipoate--protein ligase -
  DQL85_RS04805 (NCTC13137_00902) - 963563..963739 (+) 177 WP_000214898.1 YkvS family protein -
  DQL85_RS04810 (NCTC13137_00903) - 963754..964356 (+) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  DQL85_RS14415 - 964672..964734 (+) 63 WP_228764722.1 hypothetical protein -
  DQL85_RS04820 - 965273..965374 (+) 102 WP_031763719.1 hypothetical protein -
  DQL85_RS04825 - 965384..965656 (+) 273 WP_001797239.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22550.73 Da        Isoelectric Point: 9.4722

>NTDB_id=1135816 DQL85_RS04790 WP_111743811.1 961300..961869(-) (comK/comK1) [Staphylococcus aureus strain NCTC13137]
MYSQNIYVIRKGDMVIQPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILNVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1135816 DQL85_RS04790 WP_111743811.1 961300..961869(-) (comK/comK1) [Staphylococcus aureus strain NCTC13137]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCAACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCTATCATTCTTAATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

98.942

100

0.989
  comK/comK1 Staphylococcus aureus N315

98.942

100

0.989

Multiple sequence alignment