Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | DQL71_RS06710 | Genome accession | NZ_LS483305 |
| Coordinates | 1369230..1370132 (+) | Length | 300 a.a. |
| NCBI ID | WP_048539722.1 | Uniprot ID | - |
| Organism | Mammaliicoccus sciuri strain NCTC12103 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1364230..1375132
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL71_RS06670 (NCTC12103_01365) | - | 1364316..1364876 (+) | 561 | WP_048539717.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| DQL71_RS06675 (NCTC12103_01366) | - | 1364869..1366317 (+) | 1449 | WP_048539718.1 | rhomboid family intramembrane serine protease | - |
| DQL71_RS06680 (NCTC12103_01367) | - | 1366322..1366513 (+) | 192 | WP_078099923.1 | YqgQ family protein | - |
| DQL71_RS06685 (NCTC12103_01368) | - | 1366510..1367481 (+) | 972 | WP_048539719.1 | ROK family glucokinase | - |
| DQL71_RS06690 (NCTC12103_01369) | - | 1367481..1367795 (+) | 315 | WP_048539720.1 | MTH1187 family thiamine-binding protein | - |
| DQL71_RS06695 (NCTC12103_01370) | - | 1367824..1368063 (-) | 240 | WP_016911885.1 | DUF2759 domain-containing protein | - |
| DQL71_RS06700 (NCTC12103_01371) | - | 1368161..1368793 (+) | 633 | WP_048539721.1 | MBL fold metallo-hydrolase | - |
| DQL71_RS06705 (NCTC12103_01372) | - | 1368828..1369076 (-) | 249 | WP_025904960.1 | DUF2626 family protein | - |
| DQL71_RS06710 (NCTC12103_01373) | comGA | 1369230..1370132 (+) | 903 | WP_048539722.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQL71_RS06715 (NCTC12103_01374) | comGB | 1370122..1371162 (+) | 1041 | WP_075577987.1 | competence type IV pilus assembly protein ComGB | - |
| DQL71_RS06720 (NCTC12103_01375) | comGC | 1371177..1371494 (+) | 318 | WP_037588275.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQL71_RS06725 (NCTC12103_01376) | comGD | 1371472..1371921 (+) | 450 | WP_048539818.1 | competence type IV pilus minor pilin ComGD | - |
| DQL71_RS06730 (NCTC12103_01377) | comGE | 1371905..1372186 (+) | 282 | WP_048539723.1 | competence type IV pilus minor pilin ComGE | - |
| DQL71_RS06735 (NCTC12103_01378) | - | 1372161..1372595 (+) | 435 | WP_048539724.1 | competence type IV pilus minor pilin ComGF | - |
| DQL71_RS06740 (NCTC12103_01379) | - | 1372830..1373318 (+) | 489 | WP_048539725.1 | shikimate kinase | - |
| DQL71_RS06745 (NCTC12103_01381) | gcvT | 1373511..1374599 (+) | 1089 | WP_048539726.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 300 a.a. Molecular weight: 34442.27 Da Isoelectric Point: 6.1709
>NTDB_id=1135689 DQL71_RS06710 WP_048539722.1 1369230..1370132(+) (comGA) [Mammaliicoccus sciuri strain NCTC12103]
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNTPYDLDLDFKLYSRLLIYMKFIAHLDVSERNKAQSGQYLY
EHDIHYYLRISTIPISLGIESCSIRITPQHFNQSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDVTAKQVIQASLSGHLVLSTMHASD
TIGAIHRLIELGVSVEQIKQGISCITNQRLVKKNDETRTLNMSYIFKDDIINYMENDYET
MEKLFKSIINDAVNSNASDIHFVPLNDDKVFVQMRINGDNTPYDLDLDFKLYSRLLIYMKFIAHLDVSERNKAQSGQYLY
EHDIHYYLRISTIPISLGIESCSIRITPQHFNQSQVKSEHQSYNVLQNRMYQSEGLFLFTGPTGSGKTTLMYELMYALKR
EKNKHIITIEDPVEQTLNGIVQVSVNEKANITYQQSFKAILRCDPDVIMIGEIRDDVTAKQVIQASLSGHLVLSTMHASD
TIGAIHRLIELGVSVEQIKQGISCITNQRLVKKNDETRTLNMSYIFKDDIINYMENDYET
Nucleotide
Download Length: 903 bp
>NTDB_id=1135689 DQL71_RS06710 WP_048539722.1 1369230..1370132(+) (comGA) [Mammaliicoccus sciuri strain NCTC12103]
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTCAATTCAAATGCGAGTGATATTCACTTTGTACCTTTAAATGA
TGATAAAGTCTTTGTTCAAATGAGGATAAATGGTGATAATACACCTTATGATTTAGATCTAGACTTTAAATTGTATAGTA
GGCTACTCATTTATATGAAATTTATCGCTCATCTTGATGTAAGTGAACGTAATAAAGCACAAAGCGGTCAATATTTATAT
GAACATGACATTCATTACTACTTAAGAATTTCTACGATACCTATCAGTTTAGGAATAGAATCTTGTTCCATTAGAATTAC
CCCTCAACATTTTAATCAATCACAAGTGAAATCAGAGCATCAATCATATAACGTTTTACAAAATAGAATGTATCAATCAG
AAGGGCTATTTCTATTTACGGGTCCAACTGGATCAGGTAAGACGACATTAATGTATGAATTGATGTACGCTTTAAAGAGA
GAAAAGAACAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCTGACGTTATTATGATTGGAGAGATAA
GAGACGATGTTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCACGCGAGTGAT
ACAATTGGGGCAATCCATCGACTAATAGAACTAGGTGTATCAGTCGAACAAATTAAACAAGGTATTTCATGTATTACAAA
CCAACGTCTTGTGAAGAAAAATGATGAAACAAGAACTTTAAATATGTCTTATATTTTTAAAGATGACATTATTAACTATA
TGGAGAATGATTATGAAACGTAA
ATGGAGAAATTATTTAAGTCAATTATTAACGATGCTGTCAATTCAAATGCGAGTGATATTCACTTTGTACCTTTAAATGA
TGATAAAGTCTTTGTTCAAATGAGGATAAATGGTGATAATACACCTTATGATTTAGATCTAGACTTTAAATTGTATAGTA
GGCTACTCATTTATATGAAATTTATCGCTCATCTTGATGTAAGTGAACGTAATAAAGCACAAAGCGGTCAATATTTATAT
GAACATGACATTCATTACTACTTAAGAATTTCTACGATACCTATCAGTTTAGGAATAGAATCTTGTTCCATTAGAATTAC
CCCTCAACATTTTAATCAATCACAAGTGAAATCAGAGCATCAATCATATAACGTTTTACAAAATAGAATGTATCAATCAG
AAGGGCTATTTCTATTTACGGGTCCAACTGGATCAGGTAAGACGACATTAATGTATGAATTGATGTACGCTTTAAAGAGA
GAAAAGAACAAACATATTATTACGATTGAAGACCCTGTAGAACAAACGTTAAATGGCATCGTTCAAGTTTCAGTCAATGA
AAAAGCTAACATAACTTATCAACAATCCTTTAAAGCCATTTTAAGATGTGATCCTGACGTTATTATGATTGGAGAGATAA
GAGACGATGTTACTGCTAAGCAAGTTATTCAAGCTAGTTTAAGTGGTCATTTAGTACTTTCAACAATGCACGCGAGTGAT
ACAATTGGGGCAATCCATCGACTAATAGAACTAGGTGTATCAGTCGAACAAATTAAACAAGGTATTTCATGTATTACAAA
CCAACGTCTTGTGAAGAAAAATGATGAAACAAGAACTTTAAATATGTCTTATATTTTTAAAGATGACATTATTAACTATA
TGGAGAATGATTATGAAACGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
52.857 |
93.333 |
0.493 |
| comGA | Staphylococcus aureus N315 |
52.857 |
93.333 |
0.493 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
40.58 |
92 |
0.373 |