Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DQL55_RS07955 Genome accession   NZ_LS483304
Coordinates   1674581..1675462 (-) Length   293 a.a.
NCBI ID   WP_039646067.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain NCTC10350     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1669581..1680462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL55_RS07940 (NCTC10350_01635) xerC 1670088..1670978 (-) 891 WP_039646062.1 tyrosine recombinase XerC -
  DQL55_RS07945 (NCTC10350_01636) trmFO 1671100..1672404 (-) 1305 WP_039646064.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DQL55_RS07950 (NCTC10350_01637) topA 1672417..1674486 (-) 2070 WP_039646065.1 type I DNA topoisomerase -
  DQL55_RS07955 (NCTC10350_01638) dprA 1674581..1675462 (-) 882 WP_039646067.1 DNA-processing protein DprA Machinery gene
  DQL55_RS07960 (NCTC10350_01639) sucD 1676004..1676912 (-) 909 WP_039646070.1 succinate--CoA ligase subunit alpha -
  DQL55_RS07965 (NCTC10350_01640) sucC 1676934..1678100 (-) 1167 WP_039646072.1 ADP-forming succinate--CoA ligase subunit beta -
  DQL55_RS07970 (NCTC10350_01641) - 1678314..1678583 (-) 270 WP_039646074.1 hypothetical protein -
  DQL55_RS07975 (NCTC10350_01642) - 1678670..1679455 (-) 786 WP_039646076.1 ribonuclease HII -
  DQL55_RS07980 (NCTC10350_01643) ylqF 1679436..1680317 (-) 882 WP_039647653.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33365.78 Da        Isoelectric Point: 9.8589

>NTDB_id=1135667 DQL55_RS07955 WP_039646067.1 1674581..1675462(-) (dprA) [Staphylococcus hyicus strain NCTC10350]
MLLKNLIRLCYAGFTTQQLYRLFKKPLDVLTNDITQTLHQRITYENHPLFHTKLQKFNALNASQILYQLWQAHITPITIL
NDQYPRLLKEIYQPPLILFCKGNLSLLNAASYKLAIVGARDFTQYGDEAVRYLLQKMKRASIIVVSGLAKGTDALAHYNA
LKNEMPTIGVLGFGHQYHYPSETKPLRHTLETNQLGLTISEYPPMTPPAKFRFPERNRLISGISHGVLVTEAKERSGALI
TLDQALEQNRNVYVLPGDMFNKHTKGNMMRVKEGAEIVLSAEDILKDMNTSIR

Nucleotide


Download         Length: 882 bp        

>NTDB_id=1135667 DQL55_RS07955 WP_039646067.1 1674581..1675462(-) (dprA) [Staphylococcus hyicus strain NCTC10350]
GTGCTACTAAAAAATTTAATAAGATTATGTTACGCAGGATTTACGACACAACAACTTTATCGTCTTTTCAAAAAACCATT
GGACGTGTTAACCAATGATATCACACAGACATTGCACCAGCGTATTACTTATGAAAATCATCCTTTGTTTCATACCAAAC
TCCAAAAATTCAACGCGCTAAATGCCTCTCAAATTCTATATCAGCTATGGCAGGCTCACATTACGCCAATTACAATTTTA
AATGATCAATATCCACGTCTCTTAAAAGAAATCTACCAGCCACCCTTAATATTATTTTGCAAAGGTAACCTTTCGCTATT
AAACGCAGCTTCATATAAATTAGCGATAGTAGGTGCACGCGATTTTACGCAATATGGAGATGAAGCTGTACGTTATTTGC
TTCAAAAGATGAAGCGTGCTTCCATTATTGTTGTATCAGGACTTGCTAAAGGTACGGATGCACTTGCACATTACAATGCA
TTGAAAAATGAGATGCCTACTATAGGTGTGTTAGGCTTTGGGCATCAATATCATTATCCTTCTGAAACAAAACCATTACG
CCATACATTAGAAACGAACCAACTTGGTTTAACTATTAGTGAATATCCTCCTATGACCCCACCGGCTAAGTTTCGTTTTC
CTGAGCGCAATCGTTTAATTAGTGGGATAAGCCATGGGGTTTTAGTGACAGAAGCGAAAGAGCGAAGCGGTGCACTTATT
ACACTAGATCAAGCACTAGAACAAAATAGGAATGTATATGTATTACCTGGAGATATGTTTAATAAGCATACAAAAGGTAA
TATGATGCGTGTTAAAGAAGGGGCTGAAATCGTACTCTCGGCTGAAGATATTTTAAAAGATATGAATACGTCAATTCGGT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

49.825

97.27

0.485
  dprA Staphylococcus aureus MW2

49.474

97.27

0.481

Multiple sequence alignment