Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQL80_RS10775 Genome accession   NZ_LS483302
Coordinates   2107869..2108264 (-) Length   131 a.a.
NCBI ID   WP_111680495.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC8726     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2102869..2113264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL80_RS10750 (NCTC8726_02028) thiE 2103467..2104108 (-) 642 WP_000483159.1 thiamine phosphate synthase -
  DQL80_RS10755 (NCTC8726_02029) thiM 2104110..2104901 (-) 792 WP_111680493.1 hydroxyethylthiazole kinase -
  DQL80_RS10760 (NCTC8726_02030) thiD 2104885..2105715 (-) 831 WP_111680494.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DQL80_RS10765 (NCTC8726_02031) tenA 2105708..2106397 (-) 690 WP_000396067.1 thiaminase II -
  DQL80_RS10770 (NCTC8726_02033) sceD 2106785..2107480 (-) 696 WP_000752011.1 lytic transglycosylase SceD -
  DQL80_RS10775 (NCTC8726_02034) ssb 2107869..2108264 (-) 396 WP_111680495.1 single-stranded DNA-binding protein Machinery gene
  DQL80_RS10780 (NCTC8726_02035) - 2108458..2108898 (+) 441 WP_000846751.1 YwpF-like family protein -
  DQL80_RS10785 (NCTC8726_02036) fabZ 2108955..2109395 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DQL80_RS10790 (NCTC8726_02037) murA 2109429..2110694 (-) 1266 WP_000358004.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQL80_RS10795 (NCTC8726_02038) - 2110805..2111038 (-) 234 WP_000384523.1 DUF1146 family protein -
  DQL80_RS10810 (NCTC8726_02039) - 2111858..2112262 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15102.19 Da        Isoelectric Point: 5.6824

>NTDB_id=1135617 DQL80_RS10775 WP_111680495.1 2107869..2108264(-) (ssb) [Staphylococcus aureus strain NCTC8726]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLAFNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1135617 DQL80_RS10775 WP_111680495.1 2107869..2108264(-) (ssb) [Staphylococcus aureus strain NCTC8726]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTTTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment