Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DQL80_RS02615 Genome accession   NZ_LS483302
Coordinates   533942..534511 (+) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC8726     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 528942..539511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL80_RS02590 (NCTC8726_00484) cysE 530155..530802 (+) 648 WP_111680081.1 serine O-acetyltransferase -
  DQL80_RS02595 (NCTC8726_00485) cysS 530786..532186 (+) 1401 WP_111680082.1 cysteine--tRNA ligase -
  DQL80_RS02600 (NCTC8726_00486) - 532179..532583 (+) 405 WP_111680083.1 Mini-ribonuclease 3 -
  DQL80_RS02605 (NCTC8726_00487) rlmB 532591..533337 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DQL80_RS02610 (NCTC8726_00488) - 533337..533861 (+) 525 WP_000664738.1 NYN domain-containing protein -
  DQL80_RS02615 (NCTC8726_00489) sigH 533942..534511 (+) 570 WP_000872878.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL80_RS02620 rpmG 534626..534769 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  DQL80_RS02625 (NCTC8726_00490) secE 534825..535007 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  DQL80_RS02630 (NCTC8726_00491) nusG 535020..535568 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DQL80_RS02635 (NCTC8726_00492) rplK 535749..536171 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  DQL80_RS02640 (NCTC8726_00493) rplA 536379..537071 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  DQL80_RS02650 (NCTC8726_00495) rplJ 537343..537843 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  DQL80_RS02655 (NCTC8726_00496) rplL 537886..538254 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DQL80_RS02660 (NCTC8726_00497) - 538429..539037 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=1135585 DQL80_RS02615 WP_000872878.1 533942..534511(+) (sigH) [Staphylococcus aureus strain NCTC8726]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1135585 DQL80_RS02615 WP_000872878.1 533942..534511(+) (sigH) [Staphylococcus aureus strain NCTC8726]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment