Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQL88_RS12100 | Genome accession | NZ_LS483301 |
| Coordinates | 2271435..2271830 (-) | Length | 131 a.a. |
| NCBI ID | WP_000932694.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NCTC13394 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2266435..2276830
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL88_RS12075 (NCTC13394_02229) | thiE | 2267035..2267676 (-) | 642 | WP_000483153.1 | thiamine phosphate synthase | - |
| DQL88_RS12080 (NCTC13394_02230) | thiM | 2267678..2268469 (-) | 792 | WP_001108479.1 | hydroxyethylthiazole kinase | - |
| DQL88_RS12085 (NCTC13394_02231) | thiD | 2268453..2269283 (-) | 831 | WP_000594959.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| DQL88_RS12090 (NCTC13394_02232) | tenA | 2269276..2269965 (-) | 690 | WP_000396077.1 | thiaminase II | - |
| DQL88_RS12095 (NCTC13394_02234) | sceD | 2270351..2271046 (-) | 696 | WP_000752008.1 | lytic transglycosylase SceD | - |
| DQL88_RS12100 (NCTC13394_02235) | ssb | 2271435..2271830 (-) | 396 | WP_000932694.1 | single-stranded DNA-binding protein | Machinery gene |
| DQL88_RS12105 (NCTC13394_02236) | - | 2272024..2272464 (+) | 441 | WP_000846746.1 | YwpF-like family protein | - |
| DQL88_RS12110 (NCTC13394_02237) | fabZ | 2272523..2272963 (-) | 441 | WP_000447678.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| DQL88_RS12115 (NCTC13394_02238) | murA | 2272997..2274262 (-) | 1266 | WP_000358000.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| DQL88_RS12120 (NCTC13394_02239) | - | 2274373..2274606 (-) | 234 | WP_000384523.1 | DUF1146 family protein | - |
| DQL88_RS12125 | - | 2274738..2274830 (-) | 93 | WP_001790611.1 | hypothetical protein | - |
| DQL88_RS12130 (NCTC13394_02240) | - | 2275168..2275572 (-) | 405 | WP_001094394.1 | F0F1 ATP synthase subunit epsilon | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15042.09 Da Isoelectric Point: 5.6824
>NTDB_id=1135575 DQL88_RS12100 WP_000932694.1 2271435..2271830(-) (ssb) [Staphylococcus aureus strain NCTC13394]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI
Nucleotide
Download Length: 396 bp
>NTDB_id=1135575 DQL88_RS12100 WP_000932694.1 2271435..2271830(-) (ssb) [Staphylococcus aureus strain NCTC13394]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
100 |
100 |
1 |
| ssb | Staphylococcus aureus MW2 |
99.237 |
100 |
0.992 |