Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DQL88_RS06425 Genome accession   NZ_LS483301
Coordinates   1251494..1252366 (+) Length   290 a.a.
NCBI ID   WP_061642004.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC13394     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1246494..1257366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL88_RS06400 (NCTC13394_01186) sucC 1246609..1247775 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  DQL88_RS06405 (NCTC13394_01187) sucD 1247797..1248705 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  DQL88_RS06410 (NCTC13394_01188) - 1248932..1250050 (+) 1119 WP_001041662.1 LysM peptidoglycan-binding domain-containing protein -
  DQL88_RS15690 fmhC 1250078..1251321 (+) 1244 Protein_1198 FemA/FemB family glycyltransferase FmhC -
  DQL88_RS06425 (NCTC13394_01191) dprA 1251494..1252366 (+) 873 WP_061642004.1 DNA-processing protein DprA Machinery gene
  DQL88_RS06430 (NCTC13394_01192) topA 1252540..1254615 (+) 2076 WP_001548566.1 type I DNA topoisomerase -
  DQL88_RS06435 (NCTC13394_01193) trmFO 1254771..1256078 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33577.04 Da        Isoelectric Point: 9.5094

>NTDB_id=1135552 DQL88_RS06425 WP_061642004.1 1251494..1252366(+) (dprA) [Staphylococcus aureus strain NCTC13394]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYIQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1135552 DQL88_RS06425 WP_061642004.1 1251494..1252366(+) (dprA) [Staphylococcus aureus strain NCTC13394]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATATCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCTGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993

Multiple sequence alignment