Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DQL62_RS08045 Genome accession   NZ_LS483300
Coordinates   1584276..1584962 (-) Length   228 a.a.
NCBI ID   WP_078062662.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC7485     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1579276..1589962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL62_RS08025 (NCTC7485_01515) rpsT 1580188..1580439 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  DQL62_RS08030 (NCTC7485_01516) holA 1580484..1581458 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  DQL62_RS08035 (NCTC7485_01517) - 1581515..1583718 (-) 2204 Protein_1516 DNA internalization-related competence protein ComEC/Rec2 -
  DQL62_RS08040 (NCTC7485_01518) - 1583723..1584184 (-) 462 WP_000439693.1 ComE operon protein 2 -
  DQL62_RS08045 (NCTC7485_01519) comEA 1584276..1584962 (-) 687 WP_078062662.1 ComEA family DNA-binding protein Machinery gene
  DQL62_RS08050 (NCTC7485_01520) - 1585002..1585718 (-) 717 WP_000084837.1 class I SAM-dependent DNA methyltransferase -
  DQL62_RS08055 (NCTC7485_01521) rsfS 1585721..1586074 (-) 354 WP_111725116.1 ribosome silencing factor -
  DQL62_RS08060 (NCTC7485_01522) yqeK 1586075..1586659 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DQL62_RS08065 (NCTC7485_01523) nadD 1586649..1587218 (-) 570 WP_000725166.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DQL62_RS08070 (NCTC7485_01524) yhbY 1587221..1587511 (-) 291 WP_000955237.1 ribosome assembly RNA-binding protein YhbY -
  DQL62_RS08075 (NCTC7485_01525) aroE 1587515..1588321 (-) 807 WP_000666755.1 shikimate dehydrogenase -
  DQL62_RS08080 (NCTC7485_01526) yqeH 1588335..1589435 (-) 1101 WP_001280147.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25894.64 Da        Isoelectric Point: 9.4934

>NTDB_id=1135521 DQL62_RS08045 WP_078062662.1 1584276..1584962(-) (comEA) [Staphylococcus aureus strain NCTC7485]
MVLLYQFLLRYKDFLTQWKLYIISTVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNYK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GDTNNTKINLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1135521 DQL62_RS08045 WP_078062662.1 1584276..1584962(-) (comEA) [Staphylococcus aureus strain NCTC7485]
GTGGTTTTATTGTATCAATTTTTATTACGATATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTACTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTACAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGGACACAAATAATACTAAAATAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.93

100

0.969
  comEA Staphylococcus aureus N315

96.93

100

0.969

Multiple sequence alignment